Clone UFO07219 Report

Search the DGRC for UFO07219

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:72
Well:19
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptE(var)3-9-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO07219.5prime Sequence

1148 bp (1037 high quality bases) assembled on 2011-06-24

> UFO07219.5prime
CAGTCGACATGGAGTTCAGTGCGGATCTGAATGGCTTCAATGAGGACTCC
ATCGAACCCTGCCGGACTTGCGGAATTTACTTTACCATGGGAATGGACAT
GGACCAGGCGATTGTGAAGCCCATTTTCGGTTCGGATGACGCCGCCGTCG
CAGATATGGCGGAGATTCTCGAGCAAATGAATGATTGGAACATAAAGGTT
GCGAGGGAAGACGGACGACCGCAGTACATGTGCATCGCTTGCATTGCCGA
GTTTCACCGGCTGATTAAATTCAAGCGCAGCTGTGTGGAGACACAGGAGC
AGTTCGGCGAGCTCGAGTACCAGCGCGAACATAATGGCATCGTTATTAAA
CGGGAAATTGAGCCGGAGGAAGAGAAATTCTGCGGATTTATATATCTGGA
TACCGACGAGGAGGATAACAGCGACGAGGACGGTAGTAGACGCGTGTGTG
CCGTCTTCGACATACCGCATGTGCCCATTAAGGAGGAACACATGGCCCGA
GTGCCATTACAGAACAGTGACAAGTTTCAGCCACCCGAACCCAAAAATTT
TGCGTCGCCAGTCGACTCCAGATTCGACATGATAGACAACGATGCGTTAA
CGTCCGGCATGTTAGGACCGTCTATTGAGGATCTCTCCGGGACGGTCGAC
GATGGCACCGAAGATGAGGAGGAGGAGGAGGAGGAGATAGTCAGATTTAC
ATACGATGATGACAACGATGCGGCAGCCCCGCTTCCGCCCCCGCTTTACT
CGCCGGTTGTGTGTTGTAAGCTATGCTTTTACGAATCCCCCGACCAGGAT
GCGCATATGGAGCACATGCGCCGCACCCATCTCCTCAAGGACTGGGAATG
CCATATTTGCGGCAAAAGTTCACAATGCCCAAGAATCGCGCATCAAGTTT
CACATCAAGTATCACAAGCTACAGCGGCACGTTAAGTGTCCCGTTTGCGG
GTTCATCTGCAGCTCCAAGAGACCCCTCAAGGAGCACAGCAGCAGTGCAC
GTACGCCCAAGTGCAAATACTGTGAAAACTGGGAAAACGCCACTCTACAC
CCAATTGAAAAAGCACCTAGAAAGAGGGTGAGCGAACTGCCAGCCACTGA
AAATGGGACAGCTCAAGTACCTCCATCTCAATATCTATGGAGCAGGTC

UFO07219.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
E(var)3-9-RA 2136 CG11971-RA 84..1192 8..1103 5035 97.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8991792..8992631 1028..194 3830 98.5 Minus
3R 32079331 3R 8992673..8992866 201..8 970 100 Minus
Blast to na_te.dros performed 2014-11-26 23:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 2854..2899 1015..1058 117 78.7 Plus

UFO07219.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:51 Download gff for UFO07219.5prime
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 71..1175 1..1091 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:59 Download gff for UFO07219.5prime
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 75..1179 1..1091 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:25 Download gff for UFO07219.5prime
Subject Subject Range Query Range Percent Splice Strand
E(var)3-9-RA 75..1179 1..1091 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:25 Download gff for UFO07219.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8991790..8992627 198..1028 98 <- Minus
3R 8992677..8992869 1..197 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:59 Download gff for UFO07219.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4817512..4818349 198..1028 98 <- Minus
arm_3R 4818399..4818591 1..197 97   Minus