UFO07221.5prime Sequence
1143 bp (1050 high quality bases) assembled on 2011-06-24
> UFO07221.5prime
CAGTCGACATGGCGCTATGCCAGACATCGGTGCTGAAGGTGTACCATGCC
GTGATCGAGGACGTCATCACAAATGTGCGGGACGCGTTCCTGGACGAGGG
CGTCGACGAACAGGTGCTGCAGGAGATGAAGCAGGTCTGGCGCAACAAGT
TGCTTGCTAGCAAGGCCGTCGAGCTGAGCCCGGACTCCGGCGATGGCTCC
CATCCGCCACCCATCGTGGCCAACAATCCAAAGAGCCACAAGGCAGCGAA
TGCCAAGGCCAAGAAGGCCGCCGCCGCAACCGCGGTCACATCACACCAAC
ATATCGGCGGCAACAGCTCCATGTCCTCGCTGGTGGGGCTTAAGTCGTCC
GCTGGAATGGCCGCCGGCAGCGGCATAAGGAACGGGCTGGTGCCCATCAA
GCAGGAAGTCAACTCACAGAATCCACCGCCACTGCATCCTACCTCGGCTG
CAAGCATGATGCAGAAACAGCAGCAGGCGGCGAGCAGTGGACAGGGTTCC
ATTCCAATTGTGGCCACGCTGGACCCCAATCGCATTATGCCTGTTAACAT
CACGCTGCCATCGCCAGCCGGCTCTGCCAGTTCGGAATCTCGAGTGCTCA
CCATACAAGTGCCTGCCTCCGCGCTGCAGGAGAATCAGTTGACCCAAATT
CTGACGGCCCACCTGATTTCATCCATCATGTCCTTGCCCACCACGTTGGC
CTCGTCTGTGCTTCAGCAGCACGTAAACGCAGCGCTAAGCAGCGCCAATC
ACCAGAAAACTCTTGCCGCCGCCAAGCAATTGGACGGTGCCCTGGACTCC
TCCGATGAGGATGAAAGCGAGGAGAGCGACGACAACATCGACAACGATGA
CGACGATGACCTAGACAAGGACGATGACGAGGATGCGGAGCACGAGATGC
TGCCGAGGAGGAGCCGCTCAACAGCGAAGACGATGTCACCGACGAAGACT
CTGCCGAAATGTTTGACAAGATAACGTGATGTTTGTCAGTACGATAGATC
ACAGGTCGCGAAACAAATGGAAATTCTATCCTCAAAGAATGCATCATGAA
CATGGCGGGGGCAAGGACTACGTGTCAAGAATCGATGGGCGGACGCCCGA
TGTAGCAAGCCTTTCTTAGAACATCGGTTGGGGCGCCGGGCAA
UFO07221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TfIIA-L-RA | 1595 | CG5930-RA | 173..1241 | 9..1075 | 5130 | 99.1 | Plus |
| TfIIA-L-RB | 1586 | CG5930-RB | 173..1232 | 9..1075 | 4985 | 98.2 | Plus |
| TfIIA-L-RC | 1440 | CG5930-RC | 50..1086 | 32..1075 | 4870 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27255088..27255395 | 241..548 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 27255726..27255968 | 757..996 | 1065 | 98.8 | Plus |
| 3R | 32079331 | 3R | 27255456..27255663 | 549..756 | 1040 | 100 | Plus |
| 3R | 32079331 | 3R | 27254527..27254728 | 32..233 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 27256039..27256109 | 1002..1075 | 210 | 91.9 | Plus |
Blast to na_te.dros performed 2014-11-26 23:44:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 5723..5805 | 793..878 | 116 | 62.8 | Plus |
UFO07221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:51 Download gff for
UFO07221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-L-RA | 164..1259 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:01 Download gff for
UFO07221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-L-RA | 164..1259 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:27 Download gff for
UFO07221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TfIIA-L-RA | 164..1259 | 1..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:27 Download gff for
UFO07221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27255456..27255663 | 549..756 | 100 | -> | Plus |
| 3R | 27255726..27255970 | 757..997 | 98 | -> | Plus |
| 3R | 27254528..27254728 | 33..235 | 99 | -> | Plus |
| 3R | 27255084..27255395 | 236..548 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:01 Download gff for
UFO07221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23080250..23080450 | 33..235 | 99 | -> | Plus |
| arm_3R | 23080806..23081117 | 236..548 | 98 | -> | Plus |
| arm_3R | 23081178..23081385 | 549..756 | 100 | -> | Plus |
| arm_3R | 23081448..23081692 | 757..997 | 98 | -> | Plus |
