UFO07224.5prime Sequence
1157 bp (1041 high quality bases) assembled on 2011-06-24
> UFO07224.5prime
CAGTCGACATGCAGAACTGGGAGACGACAGCCACGACCAACTACGAGCAG
CACAACGCCTGGTACAACAGCATGTTCGCGGCAAATATCAAACAGGAGCC
AGGTCATCATCTCGACGGGAATAGCGTGGCCAGCAGTCCGCGCCAATCGC
CCATTCCCTCGACCAATCACCTGGAACAGTTCCTCAAGCAGCAGCAGCAG
CAGCTTCAGCAGCAACCCATGGATACCCTGTGCGCCATGACCCCATCACC
CAGCCAAAACGATCAAAACAGCCTGCAGCATTACGATGCTAACTTGCAGC
AACAGTTGCTGCAGCAACAGCAGTACCAGCAGCATTTCCAGGCAGCCCAG
CAGCAACATCATCACCATCACCATCTGATGGGTGGATTCAATCCGCTGAC
GCCACCTGGTCTGCCCAATCCCATGCAGCACTTCTATGGCGGCAATCTGC
GACCCAGTCCGCAGCCCACGCCCACATCTGCCTCCACAATTGCGCCCGTT
GCAGTTGCCACTGGCAGCAGCGAGAAGTTGCAGGCACTAACACCACCCAT
GGATGTCACACCGCCTAAGTCGCCGGCCAAGTCGAGTCAGTCGAATATTG
AGCCGGAGAAGGAGCACGATCAGATGTCGAACTCCAGCGAGGACATGAAG
TACATGGCCGAGTCCGAGGACGATGATACCAACATCCGGATGCCCATCTA
CAATTCGCACGGCAAGATGAAGAACTACAAGTGCAAGACCTGCGGCGTGG
TGGCCATCACCAATGTGGACTTCTGGGCGCACACCCGCACCCACATGAAA
CCAGACAAGATCCTGCAGTGCCCGAAGTGCCCGTTCGTCACCGAGTTCAA
GCACCACTTGGAGTACCATATCCGGAAGCACAAGAACCAAAGCCCTTCCA
GTGCGACAAATGCAGCTACACGTGTGTCAACAAATCCATGCTAAACTCGC
ACCGCAAGTCGCACAGTTCTGTGTATCAGTACCGTGTGCGGATTGTGATT
ACGCCACAGTATTGCCACAGCTCAGCTGCATCTGGCGCAGTATGTCACAG
GCCCGGCATGTTTTGACGAGATGCACCCCGATCCCTCGTGTCAATCGATG
TTACGCACGCGCTCTTGTCCGAAGCAGATGGTGGTACCGATGGCAATGAG
GAGTGGC
UFO07224.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hb-RA | 3338 | CG9786-RA | 164..1294 | 9..1124 | 5120 | 97.9 | Plus |
| hb-RB | 3181 | CG9786-RB | 516..1646 | 9..1124 | 5120 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:49:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8693092..8694154 | 1064..9 | 4915 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:49:03 has no hits.
UFO07224.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:32 Download gff for
UFO07224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hb-RA | 156..1247 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:03:25 Download gff for
UFO07224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hb-RB | 508..1599 | 1..1081 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:18 Download gff for
UFO07224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hb-RB | 508..1599 | 1..1081 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:18 Download gff for
UFO07224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8693071..8694161 | 1..1081 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:03:25 Download gff for
UFO07224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4518793..4519883 | 1..1081 | 98 | | Minus |
