UFO07230.5prime Sequence
1126 bp (1008 high quality bases) assembled on 2011-06-24
> UFO07230.5prime
CAGTCGACATGAGCTTGTGGAAGCGCATCTCCAGCCATGTCGACTGCGAG
CAGCGTATGGCGGCTTACTACGAGGAGAAGGGTATGCTCGAGCTGCGCCT
CTGCTTGGCACCCTGGATCGAAGACAGGATAATGTCCGAACAAATAACGC
CCAACACTACCGATCAGTTAGAGCGCGTGGCCCTAAAGTTCAACGAAGAT
CTGCAGCAAAAGCTTCTATCCACGCGCACCGCCAGCGACCAGGCCCTCAA
GTTCCGGGTGGTGGAGCTTTGCGCCCTCATCCAACGCATCTCCGCCGTTG
AGCTGTACACGCATCTGCGCAGCGGTCTACAAAAAGAGTTGCAGTTGGTC
ACCGAGAAGAGCGTGGCTGCAACCGCAGGCCAATCAATGCCGCTAAATCC
CTACAACATGAACAACACGCCCATGGTTACCGGGTACATGGTGGACCCCA
GTGATCTTCTGGCGGTGTCCAACAGCTGCAATCCTCCAGTTGTTCAGGGC
ATAGGACCTATCCACAATGTGCAAAATACAGGCATTGCCTCCCCAGCCCT
CGGTATGGTCACACCCAAGGTGGAGCTGTACGAGGTGCAACATCAGATCA
TGCAGTCCCTCAATGAGTTTGGCAACTGTGCCAATGCCTTGAAGCTGCTT
GCCCAAAACTACAGTTACATGCTAAACTCCACATCCTCGCCGAACGCAGA
AGCTGCCTACAGAAGTCTTATCGATGAAAAGGCGGCCATCGTACTCACAA
TGCGTCGCAGCTTTATGTACTACGAATCGCTGCACGAGATGGTCATACAC
GAGCTCAAGAACTGGCGCCACCAACAAGCGCAAGCCGGAACGGAGCTCCC
TTTAATGAGGGCTCCCTGGATGATATCCAGCGCTGCTTTGAGATGCTCGA
GAGCTTTATCGCACACATGCTGGCTGCCGTTAAGAGCTGATGCGCGTACG
TCTGGTCACCGAGAGCCGGAGCCCACACATCTGCTTGAACAGGTGCAGAC
GCCGCAGAGACCTGTATGCTCTGCCTTTATCGTCGACAACAGCCCCGCAG
TGATGAAGAACAACACACGCTCGCACGTCTGTGCGTGGCTATCGTTCCAG
CTTGCCATCCAAACATCCACCCAAGG
UFO07230.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stat92E-RM | 4029 | CG4257-RM | 675..1807 | 8..1123 | 5120 | 97.9 | Plus |
| Stat92E-RK | 4200 | CG4257-RK | 675..1807 | 8..1123 | 5120 | 97.9 | Plus |
| Stat92E-RJ | 4023 | CG4257-RJ | 519..1651 | 8..1123 | 5120 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:44:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20540607..20541553 | 1071..134 | 4240 | 98 | Minus |
| 3R | 32079331 | 3R | 20541678..20541805 | 135..8 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:44:33 has no hits.
UFO07230.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:55 Download gff for
UFO07230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stat92E-RC | 692..1801 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:12 Download gff for
UFO07230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stat92E-RJ | 513..1622 | 1..1097 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:37 Download gff for
UFO07230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stat92E-RJ | 513..1622 | 1..1097 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:37 Download gff for
UFO07230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20540576..20541553 | 134..1097 | 98 | <- | Minus |
| 3R | 20541680..20541809 | 1..133 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:12 Download gff for
UFO07230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16366298..16367275 | 134..1097 | 98 | <- | Minus |
| arm_3R | 16367402..16367531 | 1..133 | 96 | | Minus |
