UFO07236.5prime Sequence
1136 bp (1023 high quality bases) assembled on 2011-06-24
> UFO07236.5prime
CAGTCGACATGATAAAGTCCACCACGAATCCACAGGAACAGCGTCTGCCA
CGCCCCGAGGATCAGTCGCCAGCGCCGCCGCCGCCGCCCCCCTCCTCAGC
CACCACCTCCACCGCCGCCCCAGCCACGCCCACGCACCAAGTGGCCACCG
TGATAGCCAACATGGACACCCTGAAGACAGCCTTTCTGCCCAATCTCAGC
ATGGACCCCAATGTGCACGTGTCGCCGCACTATTGTCCCATGTGTCACCA
GCAGTTTGAGCGACCGCAGCACGTCGCGGATCACATGCAGCTGTGCCACG
GGATCACGCTGAACGCCCAGGGAGCCATTGCCACGCTGGACGGCGGTCAT
CCGCAGGCACAGCAGCACCCCAAGCTCAGCCACCCCTGCTTCAATTGTGA
TGAAAAGTTTGGCAACGCCGTCGATTTAGACGAACACCATCGGCTGGCCC
ATCAGACGCCCGCCTTCCTGTCCCGCTGCCTTATGTGCAGCATCTATGGC
ATCCACTCGGCCACCCAGCAGCCCAACGAGTACAAATGCACGCAGTGCGG
CTCCATTTGCACCACCGCCATGCTGGCTGCCGGACAGCAGGGCTTTATGG
AACAGCAGGAGGCGGCGGTGACGCCCGACGATCAGCTGCCGGCAATGGCG
CCCCGTGATATGAGACTGACGCCCGAGGAGCAGCACCATCAGCAGCAACT
GCAGGCGGAGCACCACCATCAGCAACAGCACCAACAACAACAACAGCAGC
AGCAGCAGCAGCATGAACTGCTGGAGCAGCAGCAGCGTGAAATGCAGGAG
CACGCGCAACAGCAGCAGGTGCACCATCACCAGCAGGATCATGATCTCGC
CGGCGACCAGGTGGCGCTGAAGTGCCACCACTCACCGTCAAGCTAAACAA
GAACGCCAACGGTGGCGCCATTGTGTCGCATCCGCAGGTCATTATCAAGG
AGGAGCCACTCAGCCTGAGCGACAGGTGGTGATGTGTCAACTCTGTGCCT
GTTCTATGCCAAAACAAGCCAATCCGGTGTACCGCCTCCGGCCAGTCGGG
TGGTGCCTAGTCGCACACAAACGGTACCTGCCGGATCTGGCGCAACAAGA
TCCGGGCCAATGTCGAATTGTCAAAGACCTCAGAAC
UFO07236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cf2-RE | 4231 | CG11924-RE | 653..1775 | 9..1130 | 5140 | 97.9 | Plus |
| Cf2-RA | 3763 | CG11924-RA | 320..1442 | 9..1130 | 5140 | 97.9 | Plus |
| Cf2-RB | 3679 | CG11924-RB | 320..1442 | 9..1130 | 5140 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:44:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4881298..4882392 | 1105..9 | 4860 | 97.8 | Minus |
| X | 23542271 | X | 13649941..13650026 | 679..764 | 190 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:44:19 has no hits.
UFO07236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:53 Download gff for
UFO07236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cf2-RA | 547..1667 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:06 Download gff for
UFO07236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cf2-RB | 313..1433 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:32 Download gff for
UFO07236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cf2-RB | 313..1433 | 1..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:32 Download gff for
UFO07236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4881279..4882398 | 1..1122 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:06 Download gff for
UFO07236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4881279..4882398 | 1..1122 | 97 | | Minus |
