UFO07237.5prime Sequence
1117 bp (1009 high quality bases) assembled on 2011-06-24
> UFO07237.5prime
CAGTCGACATGTCATCCGTCATGCACTACTATCCAGTTCACCAGGCTAAA
GTCGGCTCCTATTCAGCAGATCCTTCCGAGGTTAAATACAGTGATTTGAT
CTATGGTCATCATCACGATGTTAACCCCATCGGTCTGCCTCCCAACTACA
ACCAGATGAACTCCAACCCCACCACCCTCAACGATCACTGCTCCCCGCAG
CATGTGCATCAGCAGCATGTGTCATCGGACGAGAATCTGCCATCTCAGCC
CAACCACGACTCGCAGAGGGTGAAGCTTAAGCGATCACGGACTGCCTTCA
CCAGTGTCCAACTGGTGGAACTTGAGAACGAGTTCAAGAGCAACATGTAC
TTGTACAGGACGCGCAGGATTGAGATTGCTCAGCGCTTGTCCCTGTGCGA
ACGCCAGGTGAAGATCTGGTTCCAGAACCGACGAATGAAGTTCAAGAAGG
ACATACAAGGTCACCGCGAGCCCAAGTCCAACGCCAAGTTGGCTCAACCC
CAGGCTGAGCAGAGTGCCCACCGAGGCATAGTGAAGCGCCTCATGTCCTA
CTCCCAGGATCCCAGGGAGGGCACAGCGGCAGCAGAAAAGCGTCCTATGA
TGGCAGTGGCTCCTGTGAATCCAAAGCCAGACTATCAAGCCAGCCAGAAA
ATGAAGACCGAAGCATCAACCAACAACGGCATGTGCTCCAGCGCCGACCT
CAGCGAGATCTTGGAGCATCTGGCTCAAACTACAGCTGCACCACAGGTCA
GCACTGCCACATCTAGCACAGGAACATCTACCAACTCGGCTTCTAGCTCC
TCTTCGGGCCACTATTCCTACAACGTGGATTTGGTTCTGCAGAGCATCAA
GCAGATTTGGAGGCAGCGGCCCAGCTTGTCCAAGTCTAAATCCGCGCCTA
TCCTGCCACTCAATCCTGCATCCCAGTTCCCAAAGTCAGTCCCCACGAGC
GTGCATGCGCTCCCTCGATGAATCTGTCGTGGGGCGAGCTGCTGCCAGTC
GAGAAAGCTGACGTTATCCATGACCCGTGCGTACCTCCTACATTATCCCA
CGCAGCTTTCTAGAACATCGTTGGCGCGCCGGCAGTTATTGTCAATCTAA
TCTATCGATCTATCACT
UFO07237.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zen-RA | 1267 | CG1046-RA | 47..1103 | 9..1050 | 4895 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6753073..6753997 | 1011..96 | 4165 | 98.7 | Minus |
| 3R | 32079331 | 3R | 6754058..6754148 | 99..9 | 440 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:44:56 has no hits.
UFO07237.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:58 Download gff for
UFO07237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zen-RB | 16..1072 | 9..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:23 Download gff for
UFO07237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zen-RA | 47..1103 | 9..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:48 Download gff for
UFO07237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zen-RA | 47..1103 | 9..1050 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:48 Download gff for
UFO07237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6753028..6753997 | 96..1050 | 98 | <- | Minus |
| 3R | 6754062..6754148 | 9..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:23 Download gff for
UFO07237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2578750..2579719 | 96..1050 | 98 | <- | Minus |
| arm_3R | 2579784..2579870 | 9..95 | 100 | | Minus |
