UFO07242.5prime Sequence
1144 bp (1025 high quality bases) assembled on 2011-06-24
> UFO07242.5prime
CAGTCGACATGATGAAACGCACTCGCGTAGACGAGGTGCAATTTGGCACA
CGACCCGTTCCTCAGACCTCCGGAGGTGTGGGCGTTGGTGTCGTCGGCGT
AACTGGAGGTGGGCCAACATCCGGCGGCGGTGGCACTGCTACTGTGGGCG
TCAATACGACGGGCGTTACCATTGGTACCGTCGTGCCCAGTGCTCATAAC
GCCACCATCAGCGGGATCGGTTCCATTCACCATCGCATCCTTACTCCACA
GCATGGAGGAGCACAAACCATTGCCTATTTGCCGTCCACCACGCCGACGG
CTACGAATTTGAAGACCACAACCTCGATTGTGGATAGCACTACCGCTGGA
GGACCAGTAGGAGCAGGAGCACAGGTGGCCGTAGGAGTTGGCTCTGCAGC
CGGCGGAGGAGGCGTGGTGGTCTCCACAGGGAGCACGGGAACGCAAACAT
TACAGTATACAACATCTTATAGTGTGGCTTCGATACAGGCTGGTGGAACT
CTGAAAGCCAACACAGCGGATGGCGCGAACACGGTACAGATTCATGTCAC
AGGAGGAGGAGCTGCAAACAATCCTGCCAGTGCACAGACTGTTTCCAGCA
GCTCACAAACGGGCACAATCCGTCAGCGTACAATCAGCGGCACCCAGACA
GTGGCCACTGCAGTGGGTAATCTAGCCACGATTTCCAGCAACAACCGGTT
CAACAATCACCTTTGGGCAAGGCCCAAACGCCTCCATCGTCCGTGGTTGC
CAACAGTATCCCAGTGGGTGGAACCACCCCACCACAAGGACAGTCGGGAA
ATGCCACGCCACGCTTAAAAGTGGAGGATGCGTTGAGCTACCTGGACCAA
GTAAAGTACCAGTATGCAGACCAGCCGCAAATCTACACAACTTCCTCGAC
ATAATGAAGAATTCAAGTCGCACTGCATCGACACACCCGGAGTGATTGAG
CGAGTCTCCACACTCTTCAAGGGCACACAGAGCTGATATACGGCTTCAAC
ATGTTCTTACCGCCGGGTACAAGATCGAATCATCCGATGCTCTGCTGTTC
CGGGGGCGGGTGGTTCGATGCCCTCACACCGGGAGGCCACGAGCAGGACG
GTGCATATGCTCACGAATAGTCAGTTCGGTGCCGAATGCCATCA
UFO07242.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sin3A-RJ | 8706 | CG8815-RJ | 951..2071 | 9..1114 | 5135 | 98 | Plus |
| Sin3A-RI | 8130 | CG8815-RI | 951..2071 | 9..1114 | 5135 | 98 | Plus |
| Sin3A-RH | 7868 | CG8815-RH | 951..2071 | 9..1114 | 5135 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12584615..12585183 | 1029..466 | 2595 | 99.1 | Minus |
| 2R | 25286936 | 2R | 12585255..12585711 | 465..9 | 2285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:45:00 has no hits.
UFO07242.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:59 Download gff for
UFO07242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sin3A-RD | 926..2059 | 9..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:26 Download gff for
UFO07242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sin3A-RG | 799..1932 | 9..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:49 Download gff for
UFO07242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sin3A-RH | 951..2084 | 9..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:49 Download gff for
UFO07242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12585255..12585711 | 9..465 | 100 | | Minus |
| 2R | 12584507..12585183 | 466..1128 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:26 Download gff for
UFO07242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8472012..8472688 | 466..1128 | 96 | <- | Minus |
| arm_2R | 8472760..8473216 | 9..465 | 100 | | Minus |
