UFO07244.5prime Sequence
1141 bp (1053 high quality bases) assembled on 2011-06-24
> UFO07244.5prime
CAGTCGACATGATGAGCGCTCGCTCGGTGTCGCCCAAAGTGCTGCTGGAC
ATAAGCTACAAGCCCACACTGCCCAACATCATGGAGCTGCAGAACAATGT
GATCAAGCTGATACAGGTGGAGCAGCAGGCCTACATGCAGTCCGGCTATC
AGCTGCAGCACCAGCAGCAGCACCTCCACTCCCACCAGCACCACCAGCAG
CACCACCAGCAGCAGCATGCCCAGTACGCCCCACTGCCCTCGGAGTACGC
CGCCTATGGTATTACCGAACTGGAGGACACAGACTACAACATACCCAGCA
ACGAGGTCCTGAGCACCAGCAGCAACCAGAGTGCCCAGAGCACCAGTCTG
GAGCTGAACAACAACAACACCAGCAGCAACACCAACAGCTCCGGCAACAA
TCCGAGTGGCTTCGATGGCCAGGCCAGCAGCGGATCCTCTTGGAACGAGC
ACGGCAAGAGGGCCAGGAGCAGTGGCGACTACGATTGCCAAACCGGGGGA
TCACTGGTCATGCAGCCCGAGCACAAGAAGCTAATCCACCAGCAACAGCA
GCAGCAACAACAGCACCAGCAACAGATCTATGTGGATTACTTGCCCACCA
CCGTGGACGAGGTGGCCTCGGCTCAATCTTGTCCTGGCGTCCAGAGCACG
TGCACCTCCCCGCAATCCCACTTCGATTTTCCCGACGAGGAGCTGCCCGA
GCACAAGGCCCAGGTGTTCCTGCCCCTCTACAACAACCAGCAGCAGCAGT
CGCAGCAGCTGCAACAGCAGCAGCCGCACCAGCAAAGCCACGCCCAGATG
CACTTCCAAAACGCCTACAGACAAAGTTTCGAGGGCTACGAGCCGGCCAA
CTCGCTGACGGCAGTGCTTACTCCAGCTCGGATCGGGATGACATGGAGTA
CGCCCGCCACAACGCCCTGAGTTCAGTTAGCGATCTCAACGGAGGAGTCA
TGTCGCCCGCCTGCTTGGCGGATGACGCAGTGCCGGCAGTTTGCTGGACG
GATCCGATGCCGGCGGAATGCCTCGCAAGCCACGTCGCCGGCTGAGCGAA
GCCCAGCAGGACGGAGAGAACGACGAGTCAGCACCAGCGGTCATGCCAAT
GGGAGGGGAGCCAGCGCACCTAGCTCACAGAGCCTTCAGTC
UFO07244.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twi-RC | 2368 | CG2956-RC | 647..1771 | 9..1120 | 5220 | 98.3 | Plus |
| twi-RB | 1883 | CG2956-RB | 162..1286 | 9..1120 | 5220 | 98.3 | Plus |
| twi-RA | 2097 | CG2956-RA | 376..1500 | 9..1120 | 5220 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23046483..23047547 | 9..1066 | 4990 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-26 23:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2539 | 148..381 | 263 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2599..2999 | 148..563 | 261 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2707..2982 | 99..389 | 259 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2543 | 158..403 | 257 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2452..2889 | 148..567 | 257 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6905 | 288..482 | 252 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6925 | 172..391 | 246 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2849 | 74..575 | 245 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2873 | 192..785 | 238 | 54.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2339..2855 | 277..785 | 233 | 52.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..7035 | 283..568 | 225 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6932 | 357..573 | 221 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2531 | 365..575 | 219 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6839 | 315..431 | 204 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6996 | 287..574 | 188 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1585 | 322..399 | 170 | 70 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1173 | 287..399 | 170 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2544 | 357..564 | 165 | 55.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1156 | 312..400 | 164 | 67.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1143 | 315..399 | 163 | 68.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3596..3624 | 358..386 | 127 | 93.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3240..3323 | 317..397 | 125 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1487..1564 | 325..399 | 113 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5649..5685 | 362..398 | 113 | 78.4 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 979..1024 | 357..402 | 113 | 71.7 | Plus |
UFO07244.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:59 Download gff for
UFO07244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twi-RB | 152..1249 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:28 Download gff for
UFO07244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twi-RA | 370..1467 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:52 Download gff for
UFO07244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twi-RA | 370..1467 | 1..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:52 Download gff for
UFO07244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23046477..23047574 | 1..1090 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:28 Download gff for
UFO07244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18934000..18935097 | 1..1090 | 98 | | Plus |
