UFO07246.5prime Sequence
1179 bp (1061 high quality bases) assembled on 2011-06-24
> UFO07246.5prime
CAGTCGACATGGCTCACTTCAGTGGTCATCGCCAGCCGGCGACGGTGCCG
TCCCATTTCAAGGATCTCTTCACCAATGGCCAGTTGGGTGCGGCGGAGGA
GAGCAACAATAATGACCAGAACGAGCAGGAGAATCGTCCCAGTAACAATA
ACAATGCTGGACCTTCGGATCCCGCCTGCTGGGTCTTCGGTTACGGATCC
TTGTGCTGGCATCCTGGCTTTAATTACACCAAGTGCATTACGGGATATAT
TCGAGGATATGTTCGCCGCTTCTGGCAGGGCAACGTCACACATCGCGGCT
GTGAAGAGAAGCCTGGACGTGTTGCAACGCTCGTTGAGGACAAAGAGGGA
ATCACTTGGGGCTGCGCCTACAGAATAACAGGCAGCACGGCACTGGATTA
TCTCAAGCAGCGGGAGTGCACACTGGGTGGCTATGCAACAATCGATACCA
AGTTCTTCCCGCGCGTCGCCTCGCAGGACACGCCCTTCAGCGGCGAGGCG
GTCGAGGTACTGGTCTATGTGGCGACGCCAGAGAATATCTATTGGTTGGG
CGATGACCCGGTCGAGGAGATTGCCCAGCAGATCGTATCCTGCCGCGGTC
CCAGCGGACACAATGCCGAGTACCTGTTGCGCCTGGCCCTGTTCATGCAC
GAGGAGATTCCCGGCGTGAGGGACGATCATCTGTTCGAGCTGGAGCAATT
GGTTTTAGAGGAACTGTACCGCCGCCAAATACCTCTGTCATCTGTGATGG
GCCGCAATCCAGATAGGATACGCCGCGACTCGCACGAGGACATCCGCCGC
CCGCCATCCTTCGAGTTCACCTCCCGTGTGCCCGACACCAAGCTGCGTTG
CCTGAACATTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATCTCCCCAATAAAAAACGC
CAGCGCAACCGAGCGTTCTGAACAATCCAGAATGAGTTCTGAGTCATTAC
TGGATCCTATCAACAGGAGTCCAAGCCGAGCTCGAATTCAATTACGCCCC
GCCCTGCCACTCTATCGCAGTTCTGTTGTAATTCATTAGGCATTCTGCCC
CACTGAAGCCATCCAAACCGCAGATGAAC
UFO07246.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:44:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10365-RD | 1642 | CG10365-RD | 519..1370 | 9..860 | 4260 | 100 | Plus |
| CG10365-RA | 1427 | CG10365-RA | 304..1155 | 9..860 | 4260 | 100 | Plus |
| CG10365-RB | 1473 | CG10365-RB | 350..1201 | 9..860 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23730793..23731227 | 426..860 | 2175 | 100 | Plus |
| 3R | 32079331 | 3R | 23728857..23729159 | 9..311 | 1515 | 100 | Plus |
| 3R | 32079331 | 3R | 23730647..23730729 | 346..428 | 415 | 100 | Plus |
| 3R | 32079331 | 3R | 23729935..23729973 | 310..348 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:44:42 has no hits.
UFO07246.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:56 Download gff for
UFO07246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10365-RA | 257..1113 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:15 Download gff for
UFO07246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10365-RB | 345..1201 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:41 Download gff for
UFO07246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10365-RB | 345..1201 | 1..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:41 Download gff for
UFO07246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23728852..23729159 | 1..311 | 98 | -> | Plus |
| 3R | 23729937..23729972 | 312..347 | 100 | -> | Plus |
| 3R | 23730649..23730727 | 348..426 | 100 | -> | Plus |
| 3R | 23730794..23731227 | 427..860 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:15 Download gff for
UFO07246.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19554574..19554881 | 1..311 | 98 | -> | Plus |
| arm_3R | 19555659..19555694 | 312..347 | 100 | -> | Plus |
| arm_3R | 19556371..19556449 | 348..426 | 100 | -> | Plus |
| arm_3R | 19556516..19556949 | 427..860 | 100 | == | Plus |
