UFO07247.5prime Sequence
1151 bp (1038 high quality bases) assembled on 2011-06-24
> UFO07247.5prime
CAGTCGACATGCCTAAGAATGGCGATGCCGGCAACCGGAGCGGTTCCGGG
ACAACCAGCGACGGCTGCATCTATCCGGACGACGTCATAATGGGCGTGGG
TGTTGCATTCAACGTGCGGTACACGGGATGCGTTGAGGTCAAGACCTCAA
TGAAATCCCTGGACTTCGAGACCCGTACGCAGTTAGCGCGAGAGTGCATC
AATCGAGTTTGCGAGGCGGCCGGTTTAAAGTCTGCTGGCAAGCGGAGATT
AACCAACTTCATATCGGATCGACCCAGCATGCAGCACGCCGGCACCAACA
TCATCATTAATGTATCGAGCCGTGCTCTGTCGCTAAGCAACGTGGAAACG
GGCGAGGTTATAGCCAATCACAATATGCCGCGCATATCGTTCGCGTCCGG
CGGTGACAATGACACCCTCGACTTCCTCGCCTACATAGCCAAGAATGAGG
ATGAATGGCGGGCATGTTATGTCCTGGAATGCGCTGGCGGCCAAAGCGAG
GATCTAATAGTGACCATTGGCAAGGCGTTTGCCTTGCGCTTCAACGCTCT
CAGTAGGCTCAATGATCCCTCGGCGGATTGTAACATCAATCAAAGCTGCA
AGGAGAATGTGAAGGAGTACTACAACGATTTGCCAAACAAGCTGCCACCA
GAAGTGCCGGAACCACAACAACAGCAGGTGCAGCAACCTCTCCATCCGCA
TGCGCCTCGTGTGGCACAACTGAATCTGAAGAAGCCTCGCGATCGCCTGA
GCAGCAACCTCATCGACCTCAACTCCCCGCCTCCCGATCAGACGACCAAT
AAGTTAGCCACTTTGATCCCCTCCAAGCGACCACAGCTGCCAATTCTGTT
TTGCCCTCTGTTCGCGATGTGTTCGACGGACCGCAATGCCCGCTCACAGC
GGAGGGGTGGTTCCATGCGGGCATATCCAGACCAATATCGGAGCGTTTGC
TGCAGCAGACGGCGACTTTCTGGTGCGCCGAGTCACAGGAAAGCGGGCCA
GTACGTACTAACCGGAATAGAAGGGCCAGACGCCCAAGCATTCTGCTTCT
CATCGATCCCGAGGGGCGTGGTCCGAACAAGATCGCATCTTCGACACCAT
TAGCCATTCTGAATCCACTACACATGGGCACACGCGCTGCCATCATTCCG
G
UFO07247.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Shc-RA | 1600 | CG3715-RA | 134..1277 | 9..1151 | 5300 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:44:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9427386..9428337 | 190..1141 | 4105 | 97.9 | Plus |
| 3L | 28110227 | 3L | 9427143..9427324 | 9..190 | 910 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6863 | 635..776 | 135 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6893 | 640..773 | 135 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6864 | 640..762 | 131 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2301..2379 | 627..705 | 125 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2502 | 640..773 | 114 | 54.8 | Plus |
UFO07247.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:57 Download gff for
UFO07247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shc-RA | 139..1287 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:18 Download gff for
UFO07247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shc-RA | 129..1277 | 1..1151 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:43 Download gff for
UFO07247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Shc-RA | 129..1277 | 1..1151 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:43 Download gff for
UFO07247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9427387..9428348 | 191..1151 | 97 | | Plus |
| 3L | 9427138..9427324 | 1..190 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:18 Download gff for
UFO07247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9420238..9420424 | 1..190 | 97 | -> | Plus |
| arm_3L | 9420487..9421448 | 191..1151 | 97 | | Plus |
