UFO07248.5prime Sequence
1157 bp (1050 high quality bases) assembled on 2011-06-24
> UFO07248.5prime
CAGTCGACATGCGTCCCCCAGAGTTCAAGCTTAACAATCCGCCGGAGGAC
CTGATCTCCGCTGTGAAATTCGGCCCCAAATCGAATCAATACATGGCGGC
GTCTTCTTGGGACGGAACACTTAGATTCTATGATGTGCCGGCAAACCAGC
TGCGTCAGAAATTCGTGCAGGATGCCCCTCTTCTCGACTGTGCCTTCATG
GACATAGTGCACGTGGTCAGTGGCTCCCTGGACAACCAGCTGCGTCTCTT
TGATGTCAACACCCAGGCGGAAAGCATAATTGGTGCCCACGAGGAGCCCA
TCAGATGCGTGGAGCACGCCGAGTATGTCAATGGCATCCTCACGGGTAGC
TGGGACAATACCGTGAAGCTGTGGGACATGCGGGAGAAGCGCTGCGTTGG
AACCTTCGAACAGAACAACGGAAAGGTGTACTCCATGTCCGTGATCGACG
AAAAGATCGTGGTGGCCACCTCCGACCGCAAGGTGCTCATCTGGGACCTT
CGCAAGATGGACAGCTACATCATGAAGCGGGAGTCCTCGCTCAAGTACCA
GACCCGCTGCATTCGTCTATTCCCCAACAAAGAAGGCTACGTGATGTCCT
CCATCGAGGGACGGGTGGCAGTGGAGTACCTGGATCACGATCCTGAGGTG
CAGCGCCGCAAGTTCGCTTTCAAGTGCCACCGGAATAGGGAGCAGAATAT
CGAACAGATCTACCCCGTTAATGCCTTGAGTTTCCACAATGTCTATCAGA
CGTTCGCCACTGGCGGATCCGATGGCATTGTGAACATTTGGGATGGCTTC
AACAAGAAGCGCCTTTGTCAGTTCCACGAATACGATACCTCCATATCCAC
GCTCAACTTCAGCTCCGATGGCAGCGCCCTGGCCATCGGCTGCTCCTACT
TGGACCAACTGCCAGAGACGCCGGCTACAGTGCCACATCCGGCTATCTAT
ATACGCTATCCCACGGACAGGAAACTAAACAGAAAGCAAGCTTTCTAGAC
ATTCGTTTGGCGCCGCGGGCCCAGGTAGTGGTCATATTCATAATCATAAT
CATAATCATATCACAACTAGGCTAGGAGATCTGTCATGACTATGCTGATC
CCACATAAACGCCGCGCACGGAGTTCGACATTCATGGGATTCTGAGTCAT
ACTGAAT
UFO07248.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:44:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bub3-RB | 1362 | CG7581-RB | 114..1091 | 9..985 | 4865 | 99.9 | Plus |
| Bub3-RA | 1236 | CG7581-RA | 114..1091 | 9..985 | 4865 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:44:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29674278..29675064 | 985..200 | 3885 | 99.9 | Minus |
| 3R | 32079331 | 3R | 29675116..29675308 | 201..9 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:44:52 has no hits.
UFO07248.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:57 Download gff for
UFO07248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bub3-RA | 112..1096 | 9..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:20 Download gff for
UFO07248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bub3-RA | 114..1098 | 9..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:45 Download gff for
UFO07248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bub3-RA | 114..1098 | 9..993 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:45 Download gff for
UFO07248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29674271..29675063 | 201..993 | 99 | <- | Minus |
| 3R | 29675117..29675308 | 9..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:20 Download gff for
UFO07248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25499993..25500785 | 201..993 | 99 | <- | Minus |
| arm_3R | 25500839..25501030 | 9..200 | 100 | | Minus |
