UFO07251.5prime Sequence
1105 bp (999 high quality bases) assembled on 2011-06-24
> UFO07251.5prime
CAGTCGACATGGGCAAGGAGAAGATCCATATTAACATTGTGGTCATTGGC
CATGTGGACTCCGGCAAGTCGACGACCACCGGCCACTTGATCTACAAATG
CGGCGGCATCGACAAGCGTACGATTGAGAAGTTCGAGAAGGAGGCCCAGG
AAATGGGAAAAGGCTCCTTTAAGTACGCCTGGGTACTGGACAAGCTGAAG
GCAGAGCGGGAGCGGGGCATCACCATCGACATTGCCCTATGGAAGTTCGA
GACGTCCAAGTACTATGTGACCATCATCGATGCCCCTGGTCACAGGGATT
TCATCAAGAACATGATTACCGGTACCTCTCAGGCCGATTGTGCGGTGCTG
ATCGTCGCCGCCGGAACTGGAGAGTTCGAGGCCGGGATCTCGAAGAACGG
CCAGACCCGCGAGCACGCCCTTCTGGCATTCACGCTGGGCGTGAAGCAGC
TTATTGTGGGCGTCAACAAGATGGACTCCACTGAGCCGCCGTACAGCGAG
GCCCGCTACGAGGAGATCAAGAAGGAGGTGTCCTCGTACATCAAGAAGAT
CGGCTACAATCCGGCCTCGGTGGCCTTCGTGCCCATCTCCGGATGGCACG
GCGACAATATGCTGGAGCCGTCCGAGAAGATGCCCTGGTTCAAGGGATGG
TCCGTGGAGCGCAAGGAAGGCAAGGCAGAGGGCAAGTGCTTGATCGACGC
GCTGGACGCGATCCTTCCACCCCAGCGTCCCACCGACAAGCCGCTGCGCC
TGCCGCTCCAGGACGTCTACAAGATCGGAGGCATCGGAACCGTACCAGTA
GTCGTGTGGAGACTGGTCTCCTCAAGCCAGGCATGGTCGTCAACTTTGCG
CCGGTCAACCTGGTCACCGAAGTAAAGTCTGTGGAGATGCACCACGAGCT
CTCACCGAAGCCATGCCCGGCGACACGTTGGCTTCAACGTGAAGAACGTG
TCCGTGAGAGCTCGTCGTGCTTTGTGCCGCGATTCCAGACATCTCTAGGG
AGCAGCGACTTACCGCCCAGGGATGGCTCACATCGGCAGAATCGCAATGG
TTACCTCCGGTCTTGGATGGCCAACGCCCACATTGCTGCAAGTTCGAATC
AGGAA
UFO07251.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha100E-RD | 2603 | CG1873-RD | 178..1292 | 9..1094 | 4745 | 96.7 | Plus |
| Ef1alpha100E-RC | 2591 | CG1873-RC | 166..1280 | 9..1094 | 4745 | 96.7 | Plus |
| Ef1alpha100E-RB | 2594 | CG1873-RB | 169..1283 | 9..1094 | 4745 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31740347..31741170 | 9..831 | 4070 | 99.9 | Plus |
| 2R | 25286936 | 2R | 11893573..11894526 | 7..957 | 2310 | 83.5 | Plus |
| 3R | 32079331 | 3R | 31741624..31741755 | 828..957 | 560 | 98.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:45:29 has no hits.
UFO07251.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:03 Download gff for
UFO07251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RC | 163..1140 | 2..976 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:38 Download gff for
UFO07251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RB | 166..1143 | 2..976 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:01 Download gff for
UFO07251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RB | 166..1143 | 2..976 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:01 Download gff for
UFO07251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31740344..31741169 | 2..830 | 99 | -> | Plus |
| 3R | 31741627..31741778 | 831..976 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:38 Download gff for
UFO07251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27566066..27566891 | 2..830 | 99 | -> | Plus |
| arm_3R | 27567349..27567500 | 831..976 | 95 | | Plus |
