UFO07253.5prime Sequence
1104 bp (1024 high quality bases) assembled on 2011-06-24
> UFO07253.5prime
CAGTCGACATGTACCACAGTAGCGCCGTTGCGGCATACACGGACCTGGCT
GCCGCCGGTAGTGCCGCAAGCGCCGGAGTCGGAGTCGGGGTGTCCGGCTA
TCACCAGCAGGCGGTAAACGCTCCCGTTTACGTGCCATCCAACCGACAGT
ACAACCACGTGGCCGCTCATTTTGGAAGCGCTGCGGCGCAGAATGCCTGG
ACCACGGAAGGATTCGGATCGGCGCATGCACAGTTCTACTCGCCAAACGC
CGCTGTGATGATGGGCTCGTGGCGCAGTGCCTACGATCCGTCGGGCTTCC
AAAGATCCTCGCCCTACGAGAGCGCTATGGACTTCCAGTTTGGCGAGGGA
CGCGAGTGCGTCAATTGCGGTGCCATATCGACTCCGTTGTGGCGACGGGA
TGGAACCGGACACTATCTGTGCAACGCCTGCGGACTGTACCATAAGATGA
ACGGAATGAACCGGCCGCTGATCAAGCCTAGCAAGCGCCTGGTGAGTGCA
ACTGCCACTCGGAGGATGGGCTTGTGCTGCACCAACTGCGGCACTCGGAC
CACCACACTTTGGAGACGCAACAACGATGGCGAACCCGTGTGCAATGCCT
GCGGACTGTACTACAAGTTGCACGGTGTTAACAGACCACTGGCCATGAGG
AAGGATGGCATTCAGACCAGGAAACGAAAGCCCAAGAAAACGGGAAGTGG
TTCGGCGGTGGGAGCGGGCACTGGATCCGGAACAGGCTCCACTTTGGAGG
CCATCAAAGAGTGCAAGGAGGAGCATGATCTCAAACCCTCGCTCAGCCTG
AGCGCCATAGCCTCAGTAAGCTGCACACGGATATGAAGAGCGGCACCAGC
AGTAGTAGCACCTTGATGGGACATCACAGCGCGCAGCAGCAGCAGCAGCA
GCAACAGCACAACACAGCACAGCAGCAGCAGCAGCAGCAATCGGCACACA
ACAATGCTTTCCCTTTACGACAGACGACGACGCACAGCAGCACAGCAACA
TGCCACAGCATGAAATCATCCTCTGACAGCAATCTGATGCCGCCAACTCA
CGGACGCAGACGAGCTCTACCGCCGCACCATCGCGGAGCATGGCTTGGCT
ACCA
UFO07253.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnr-RD | 3840 | CG3978-RD | 890..1951 | 9..1054 | 4850 | 98.1 | Plus |
| pnr-RA | 2720 | CG3978-RA | 651..1712 | 9..1054 | 4850 | 98.1 | Plus |
| pnr-RB | 2786 | CG3978-RB | 717..1778 | 9..1054 | 4850 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16038716..16039207 | 9..500 | 2460 | 100 | Plus |
| 3R | 32079331 | 3R | 16039270..16039546 | 501..777 | 1355 | 99.3 | Plus |
| 3R | 32079331 | 3R | 16039614..16039872 | 777..1025 | 780 | 95.8 | Plus |
| 3R | 32079331 | 3R | 8160976..8161109 | 478..345 | 370 | 85.1 | Minus |
| 3R | 32079331 | 3R | 16018047..16018168 | 567..688 | 265 | 81.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:45:38 has no hits.
UFO07253.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:04 Download gff for
UFO07253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnr-RA | 839..1898 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:42 Download gff for
UFO07253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnr-RB | 709..1768 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:03 Download gff for
UFO07253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnr-RB | 709..1768 | 1..1045 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:03 Download gff for
UFO07253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16039615..16039938 | 778..1080 | 91 | -> | Plus |
| 3R | 16038708..16039207 | 1..500 | 99 | -> | Plus |
| 3R | 16039270..16039546 | 501..777 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:42 Download gff for
UFO07253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11864430..11864929 | 1..500 | 99 | -> | Plus |
| arm_3R | 11864992..11865268 | 501..777 | 99 | -> | Plus |
| arm_3R | 11865337..11865660 | 778..1080 | 91 | -> | Plus |
