UFO07255.5prime Sequence
955 bp (955 high quality bases) assembled on 2011-06-24
> UFO07255.5prime
CAGTCGACATGGGCAAGGATTTCGATGCTGTTGGATTCGTCAAGGATTTC
GCTGCCGGAGGCATCTCCGCAGCTGTCTCCAAGACTGCCGTCGCCCCCAT
TGAGCGTGTGAAACTGCTCCTGCAGGTTCAGCACATCTCGAAACAAATCA
GCCCCGACAAGCAGTACAAGGGCATGGTTGATTGCTTTATCCGCATTCCA
AAGGAGCAGGGATTCTCGTCCTTCTGGCGCGGCAACTTGGCCAACGTCAT
CAGATACTTCCCAACCCAGGCTCTGAACTTTGCCTTCAAGGACAAGTACA
AGCAGGTCTTCCTGGGTGGCGTGGACAAGAACACCCAGTTCTGGCGCTAC
TTCGCCGGCAACTTGGCCTCCGGTGGTGCCGCTGGTGCTACCTCTCTGTG
CTTTGTCTACCCCTTGGACTTTGCCCGTACTCGCTTGGCTGCTGATACTG
GCAAGGGTGGTCAGCGTGAATTCACCGGTCTGGGCAACTGCTTGACCAAG
ATCTTCAAGAGCGACGGCATCGTTGGATTGTACCGTGGTTTCGGAGTGTC
CGTGCAGGGCATCATCATCTACCGTGCCGCCTACTTCGGCTTCTACGATA
CCGCTCGCGGTATGCTGCCCGACCCCAAGAACACACCCATCTACATCAGC
TGGGCCATCGCCCAGGTTGTGACAACCGTCGCTGGCATCGTGTCCTATCC
CTTCGATACCGTGCGTCGTCGCATGATGATGCAGTCTGGTCGCAAGGCCA
CCGAGGTCATCTACAAGAACACACTGCACTGCTGGGCCACCATCGCCAAG
CAGGAGGGCACCGGTGCCTTCTTCAAGGGCGCCTTCTCCACATTCTCAGA
GGAACTGGTGCCGCTTTCGTGCTTTGTGTTGTACGATGAGATCAAGAAGG
TCTTGTCAAGCTTTCTAGACCATTCCTTTGGCGCGCGGGCCCAGGTAATG
GTCAT
UFO07255.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sesB-RE | 1685 | CG16944-RE | 158..1055 | 9..906 | 4430 | 99.7 | Plus |
| sesB-RD | 1853 | CG16944-RD | 226..1123 | 9..906 | 4430 | 99.7 | Plus |
| sesB-RB | 1640 | CG16944-RB | 113..1010 | 9..906 | 4430 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10781623..10782096 | 906..433 | 2260 | 99.4 | Minus |
| X | 23542271 | X | 10782378..10782676 | 307..9 | 1495 | 100 | Minus |
| X | 23542271 | X | 10782173..10782302 | 433..304 | 650 | 100 | Minus |
| X | 23542271 | X | 10779296..10779600 | 833..529 | 490 | 77.4 | Minus |
| X | 23542271 | X | 10780210..10780337 | 292..165 | 445 | 89.8 | Minus |
| X | 23542271 | X | 10780001..10780123 | 425..303 | 300 | 82.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:45:47 has no hits.
UFO07255.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:05 Download gff for
UFO07255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RB | 101..1011 | 1..913 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:46 Download gff for
UFO07255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RC | 213..1122 | 1..913 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:08 Download gff for
UFO07255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sesB-RB | 105..1015 | 1..913 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:08 Download gff for
UFO07255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10781621..10782095 | 434..909 | 99 | <- | Minus |
| X | 10782173..10782300 | 306..433 | 100 | <- | Minus |
| X | 10782380..10782683 | 1..305 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:46 Download gff for
UFO07255.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10675654..10676128 | 434..909 | 99 | <- | Minus |
| arm_X | 10676206..10676333 | 306..433 | 100 | <- | Minus |
| arm_X | 10676413..10676716 | 1..305 | 99 | | Minus |
