UFO07259.5prime Sequence
1138 bp (1036 high quality bases) assembled on 2011-06-24
> UFO07259.5prime
CAGTCGACATGACATCAAATAGTTGTTTAATCAGTCTAGGCCTTCTCCTG
GTCCTTATTCAAATTCTAGCTCCAGCAAAGGCTGCGGAGCACTCAGTGTT
CACCCACAAAAACGCATCATCGGTCTTGGGTCAATTGGTTACCTCGAGTA
CCCTAGTATGGGAAAGCTATGACCCCAAGGATGCTACACAGTTGCAGTTC
GCCGTGGAGGGCGGAAAGTACGTTACTGAGGATGAGCATTACCCCATGTA
CGTATGTCGTGTACCAATCGATGGTATCCAAGTGTCCGGCCATACCGAGA
AAATCCTTCAGAGACACGTCTGCCTTGCGGCCCACTATAAGCACGGAAAA
TACGACAACTTCGATGTCCTTATGAACAAGGGTCACCTGGGGAAGGTTGG
CTGGCGTCATTGGCGTAAGTTCGATGCTGGTGTTCCCGTCGGTGCCATAC
GCATTGGAGATGACTCTTACATTGGTCGCCATCGGGCCCCAAGTCAACCG
AACAAGGACGGGGTCGTCACCCATTGGGGAGCAGACTTCAATCTGGGCCA
CTTGGAGCCGGTGGGTCTGGGAAAAATTAGGGTCATCGAAGCCGAACGTG
AGAAGTACTACGACGACGGCGAGGTTTTAGTCGAAACAGAGCCCTTCCGA
TACGAGCTCAGGGACATCAAACTGGATCGATTGCGCACTGATATTCAAGA
GAATATGACTGAACTGGTTACTAGGAAGCTTGAAAATCTGGAAGATAAAT
ATAGTACTGTGGAGACTATTCTAAGCTATACCTTTAACTATAATCAATAT
TGGGGATCCCACGAGGGTGTTGCTCGTGGTTTACCAACAAAAATATTTGA
AAAGATGAAGCCGTTCCGGCTGAATTAATTGGGCCTTAAAACACACCGAA
AAGCGATCGGAAACAGCAGTGCACACGAAACTTTGGCCTGTACAGCAATT
ATGTTACGCTACGTGCAATTATGTGACCCTGGAGGCGCCGTACAGTGCAA
GCTCTTTGCTTTTTATTACGAAGCGATGAAAGTGTTTCCCGAAGATCAAG
CGCAAGAGGTGCGAAAAGGCTACTGAGGAGGGGAGCTGGATCAGCCCTCC
GTCTCTACTGAATGGAAACCGTACTCTGTTACCAACGA
UFO07259.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| uzip-RB | 4114 | CG3533-RB | 264..1399 | 9..1133 | 5070 | 97.4 | Plus |
| uzip-RA | 2463 | CG3533-RA | 264..1399 | 9..1133 | 5070 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 25027776..25028484 | 9..717 | 3545 | 100 | Plus |
| 2R | 25286936 | 2R | 25028541..25028877 | 717..1043 | 1225 | 96.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:45:16 has no hits.
UFO07259.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:01 Download gff for
UFO07259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uzip-RA | 269..1362 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:31 Download gff for
UFO07259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uzip-RA | 257..1350 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:55 Download gff for
UFO07259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uzip-RA | 257..1350 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:55 Download gff for
UFO07259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 25028542..25028877 | 718..1043 | 97 | == | Plus |
| 2R | 25027769..25028484 | 1..717 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:31 Download gff for
UFO07259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20915292..20916007 | 1..717 | 99 | -> | Plus |
| arm_2R | 20916065..20916400 | 718..1043 | 97 | == | Plus |
