UFO07260.5prime Sequence
1115 bp (1003 high quality bases) assembled on 2011-06-24
> UFO07260.5prime
CAGTCGACATGGCCAACGTGGAATCTATGATTGTGGAGGAAAAGACGCAG
GTCAAGCAGATTGACCGCGAGAAGACCTGTCCTATGCTGCTCCGTGTCTT
CTGCTCTACGGGACGACACCACTCCGTGTCGGAGTATATGTTCGGCAACG
TGCCCACCAACGAGCTTCAGATTTACACCTGGCAAGACGCCACCCTGCAC
GAACTGACCTCTCTGGTGCGAGACGTCAATCCGGACACCCGGAAGAAGGG
CACCTACTTTGACTTTGCTGTCGTGTACCCCAACTTCCGGAGTAATCACT
TCCAGATGCGCGAAATCGGAGTGACCTGCACGGGTCAAAAAGGAATCGAT
GATAATAAGACACTTGCTCAGGCCAAATTCAGCATTGGAGACTTTCTGGA
CATCTCGATTACTCCGCCCAACCGACTGCCGCCAACCGCCAGGCGCCAGC
GTCCGTACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCC
GGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATT
ACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCC
CGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCG
ACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCAT
CAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGG
CGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGTGAAACTCA
CCCAGGGATTGGCTGAGACGAAAACATATTCTCATAAACCCTTTAGGAAT
AGCCAGGTTTTCACCGTACACGCCACATCTTGCGAATATATGTGTAGAAC
TGCCGAATCGTCGTGTATCCCTCCAGAGCGATGAAACGTTCAGTTTGCCT
CATGGAAACGTGTACAGTGAACCTATCCCAATCACAGCCACCGTCTTTCA
TTGCATACGGATCGT
UFO07260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bin1-RC | 1240 | CG6046-RC | 689..1141 | 6..458 | 2265 | 100 | Plus |
| Bin1-RB | 3336 | CG6046-RB | 2785..3237 | 6..458 | 2265 | 100 | Plus |
| Bin1-RA | 669 | CG6046-RA | 118..570 | 6..458 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16186255..16186640 | 458..73 | 1930 | 100 | Minus |
| 3R | 32079331 | 3R | 16186712..16186780 | 74..6 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:45:20 has no hits.
UFO07260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:01 Download gff for
UFO07260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bin1-RA | 108..574 | 1..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:34 Download gff for
UFO07260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bin1-RA | 108..574 | 1..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:56 Download gff for
UFO07260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bin1-RA | 112..578 | 1..466 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:56 Download gff for
UFO07260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16186712..16186781 | 1..74 | 94 | | Minus |
| 3R | 16186255..16186638 | 75..458 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:34 Download gff for
UFO07260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12012434..12012503 | 1..74 | 94 | | Minus |
| arm_3R | 12011977..12012360 | 75..458 | 100 | <- | Minus |
