UFO07263.5prime Sequence
835 bp (825 high quality bases) assembled on 2011-06-24
> UFO07263.5prime
CAGTCGACATGGAGAACCTAACGAATGTTCAGGCACATCAGGAAGAGGAG
GAGGAAGAAGGTCCACTCAGCGTGACTAAGTTAATAGGCGGCAGCATCAC
GGCCAAGGACATCAAGCTGCTCCAGCAGGCCAGTCTGCACACCGTGGAGT
CGGTGGCCAATGCCACCAAAAAGCAACTGATGGCCATTCCCGGCTTGGGC
GGCGGCAAGGTGGAGCAGATCATCACGGAGGCTAACAAACTGGTGCCTCT
GGGCTTCCTTAGTGCTCGCACCTTCTATCAAATGCGTGCCGATGTCGTGC
AGCTGAACACGGGCTCCAAGGAGCTGGATAAACTGCTGGGCGGCGGCATT
GAGACGGGATCCATTACCGAAATCTTTGGCGAGTTCCGCTGCGGAAAGAC
CCAATTGTGCCACACTCTGGCAGTAACCTGCCAGCTGCCCATCAGCCAGA
AGGGCGGCGAGGGCAAGTGCATGTACATCGACACGGAGAACACCTTCCGT
CCGGAGCGTTTGGCTGCCATCGCGCAAAGGTACAAACTGAATGAATCCGA
GGTGCTGGACAATGTGGCCTTCACCCGTGCCCAAACTCAGATCAGCAGAC
CAAGCTCATCCAGATGGCGGCGGGCATGCTCTTTGAGTCCAGATACGCTT
TGCTGATTGTGGACAGTGCCATGGCGCTCTACAAATCCGATTATATTGGT
CGCGGGGAGCTGGCCGCCAGGCAAAACCATTTGGGCTTATTTCTGCGCAT
GCTTCATCGCCTGGCCGATGAGTTCGGAGTGCCTGTGGTAATACTAAACC
AGGTTACTGCCTCGCTGGACGGCGCACCCCGGCAT
UFO07263.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-A-RA | 1279 | CG7948-RA | 99..925 | 9..835 | 3925 | 98.6 | Plus |
| spn-A-RB | 1342 | CG7948-RB | 240..988 | 87..835 | 3565 | 98.7 | Plus |
| spn-A-RB | 1342 | CG7948-RB | 99..177 | 9..87 | 365 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30055055..30055798 | 829..87 | 3520 | 98.5 | Minus |
| 3R | 32079331 | 3R | 30055861..30055939 | 87..9 | 365 | 97.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:46:11 has no hits.
UFO07263.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:08 Download gff for
UFO07263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-A-RA | 100..933 | 1..835 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:57 Download gff for
UFO07263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-A-RA | 92..925 | 1..835 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:17 Download gff for
UFO07263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-A-RA | 92..925 | 1..835 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:17 Download gff for
UFO07263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30055050..30055798 | 87..835 | 98 | <- | Minus |
| 3R | 30055862..30055946 | 1..86 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:57 Download gff for
UFO07263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25880772..25881520 | 87..835 | 98 | <- | Minus |
| arm_3R | 25881584..25881668 | 1..86 | 94 | | Minus |
