UFO07264.5prime Sequence
1118 bp (1017 high quality bases) assembled on 2011-06-24
> UFO07264.5prime
CAGTCGACATGAGGGAACCACTGCCCGTGGCGGTGGTGACGTTGCTCCTG
TTCCTGTGGCTCGGTTCGGCGATGCCACCCACATCTGGTTCGGCGGTGCT
CATCTCCGACATGACCATGAGCGTCATGGTGGAGCTATCCTCGCGACATC
CCTTCTGCAAGATGCACACAGATCGTGGTGATATCCAGCGCATGTTGCTG
CAATCGGATCCGCGACGCATACGCCAGGTGCCGCGGGAGTCGGTGATGGA
GCTCGAGGAGGTGTGCCGCCGTCAGGGATCCTATGGCCACGAGTTTCGCG
GCGGACTGGGCTTCATCTATCCGGGCACAAAGTGGTGCGGACCGGGCACA
GCGGCCACCAGCTACGACGATCTCGGTGCGCACGCTCGCGAGGATCGCTG
CTGTCGCGAGCACGACATGTGTCCCGATGTGCTAAATGTGGGCGAATGCA
GGCGAGGATTGTGCAATCGCGGCACATTCACGAGAAGCCACTGCGATTGC
GATGCCCGGTTCAGGCGATGCTTGCAGGCGGCAAACACGGAGACGGCCAA
TACGCTGGGCGCCATCTTCTACAATGTGGTGCAGGTGACGTGCTTCCAGG
AGCGGAGTCCCTGCTCGGCACACCAGAGGTTCGAGGACTTCTACTACCGC
ACCGATCACTGTCCGGCGGAATTCCGGCAGGCGGATCTCTATGTGCCGCC
GCACGGTGACAATCTGATAGCCAAGATCCTGGCCCATCCGCAGGGCCGGG
CCCTGGCCGCTCCGTCCTGCACGATTCCCGCCAAGTCGACGGCGCGCCGT
TGGGGCGTTAAATTGGCCAGCGTTGGCTTGGCGGCGGTGAATATCCTGCG
GGAGGTGGTGCAGCGACCCCGACTCCTGTGGGATAGCCTGCAGCGCCGGT
CTCCAGGGAGCTACCACCGCCGCAAAGATATCACGATCCGGGCTATCACT
ACGAGCGACCCGGACCCGGCTCGTCCTACGATATGGCATACAGTGGTCGC
GTTACGGGCTCGACTCCCCTTGGAGCGCAGCTTCTAGACATCGTGGCCGG
CCGGGTCAAGTATGTCATATCTAATCCTATCCTATCTATCCACTAGCTAG
AATTCGCTGACATGCCTT
UFO07264.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3009-RB | 2056 | CG3009-RB | 278..1304 | 8..1026 | 4940 | 99.1 | Plus |
| CG3009-RA | 2475 | CG3009-RA | 278..1304 | 8..1026 | 4940 | 99.1 | Plus |
| CG3009-RD | 1277 | CG3009-RD | 278..898 | 8..628 | 3105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4659358..4660188 | 1001..175 | 3975 | 99.4 | Minus |
| X | 23542271 | X | 4660258..4660425 | 175..8 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:46:15 has no hits.
UFO07264.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:09 Download gff for
UFO07264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3009-RB | 265..1306 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:59 Download gff for
UFO07264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3009-RA | 268..1309 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:18 Download gff for
UFO07264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3009-RA | 268..1309 | 1..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:18 Download gff for
UFO07264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4660258..4660428 | 1..175 | 97 | | Minus |
| X | 4659329..4660187 | 176..1026 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:59 Download gff for
UFO07264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4554291..4554461 | 1..175 | 97 | | Minus |
| arm_X | 4553362..4554220 | 176..1026 | 98 | <- | Minus |
