UFO07265.5prime Sequence
1153 bp (1032 high quality bases) assembled on 2011-06-24
> UFO07265.5prime
CAGTCGACATGGAGGAATTTAATTCGAGCGGATCAGTAGTTAATGGTACA
GGATCTACGGAAGTTCCTCAATCTAATGCTGAAGTTATAAGGGGACAAAT
ATTTGAAGTTGGTCCTAGGTATATTAAACTCGCCTATATAGGTGAAGGAG
CTTATGGCATGGTTGTGTCTGCGGATGACACGCTAACAAACCAAAGAGTT
GCAATAAAAAAAATATCGCCCTTTGAACACCAAACTTATTGTCAAAGGAC
TCTCAGAGAAATAACCATATTGACCAGATTTAAACATGAAAACATTATTG
ATATTCGAGATATTCTTCGAGTTGATAGCATAGACCAAATGAGAGATGTT
TATATTGTACAGTGTTTGATGGAGACTGATTTGTATAAACTACTTAAAAC
ACAGAGGCTAAGTAATGATCACATCTGTTACTTCTTATATCAGATATTGC
GTGGACTCAAGTACATTCATTCCGCAAACGTCTTGCATCGGGACCTTAAG
CCAAGTAATTTACTGTTGAACAAGACGTGCGACTTAAAAATTTGCGACTT
TGGATTGGCTCGTATTGCAGATCCCGAGCACGATCATACTGGCTTTCTCA
CAGAATACGTTGCTACCCGATGGTATAGAGCACCTGAAATAATGCTTAAC
TCAAAAGGATACACCAAATCTATAGACATATGGTCCGTTGGCTGCATTTT
GGCTGAAATGTTAAGTAATCGGCCAATATTTCCTGGAAAACATTACCTGG
ATCAACTTAATCATATTCTTGGAGTATTGGGTTCACCGTCCCGGGACGAT
TTAGAGTGTATTATTAATGAAAAGGCACGGAACTATTTGGAATCTTTACC
ATTTAAGCCAAATGTACCCTGGCGAAACTATTTCCAAATGCTGATGCGTT
GGCTTTAGATCTCCTTGGAAAATGTTAACATTTAACCCGCATAAACGGAT
TCCTGTCGAGGAGCTCTGCAAATCCCTATTTAGAGCAATATTATGATCTG
AGATGAGCCTGTCGCTGACTGCCATTTCGGATTATATGAAATGATGACTT
TCTCGAGATGCCCTGAAGTCGTGATTTTGAAAACTAAATTTAAGACGACA
CAGACATGCCTGCAGCTTCTGGACTGTGGCCGGCCAGTATGCTATCTATC
AAT
UFO07265.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rl-RI | 2072 | CG12559-RI | 102..1184 | 8..1078 | 5095 | 98.7 | Plus |
| rl-RC | 1614 | CG12559-RC | 126..1208 | 8..1078 | 5095 | 98.7 | Plus |
| rl-RD | 1795 | CG12559-RD | 307..1389 | 8..1078 | 5095 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1113198..1113485 | 540..827 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 1212216..1212504 | 540..827 | 1290 | 97.2 | Plus |
| 2R | 25286936 | 2R | 1207919..1208207 | 540..827 | 1260 | 96.5 | Plus |
| U | 3151297 | U | 1722541..1722804 | 566..827 | 1100 | 96.2 | Plus |
| 2R | 25286936 | 2R | 1072281..1072441 | 8..168 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 1105844..1105981 | 402..539 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 1113535..1113714 | 823..998 | 685 | 97.2 | Plus |
| 2R | 25286936 | 2R | 1208257..1208436 | 823..998 | 685 | 97.2 | Plus |
| U | 3151297 | U | 1722854..1723033 | 823..998 | 685 | 97.2 | Plus |
| 2R | 25286936 | 2R | 1076635..1076761 | 167..293 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 1212554..1212733 | 823..998 | 625 | 95 | Plus |
| 2R | 25286936 | 2R | 1080331..1080441 | 294..404 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:46:19 has no hits.
UFO07265.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:10 Download gff for
UFO07265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rl-RE | 73..1170 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:02 Download gff for
UFO07265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rl-RE | 78..1175 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:21 Download gff for
UFO07265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rl-RD | 300..1397 | 1..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:21 Download gff for
UFO07265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1072274..1072439 | 1..166 | 97 | -> | Plus |
| 2R | 1076635..1076761 | 167..293 | 100 | -> | Plus |
| 2R | 1080331..1080441 | 294..404 | 100 | -> | Plus |
| 2R | 1105847..1105981 | 405..539 | 100 | -> | Plus |
| 2R | 1113198..1113482 | 540..824 | 100 | -> | Plus |
| 2R | 1113537..1113725 | 825..1007 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:02 Download gff for
UFO07265.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 207045..207155 | 294..404 | 100 | -> | Plus |
| 2RHet | 232561..232695 | 405..539 | 100 | -> | Plus |
| 2RHet | 203349..203475 | 167..293 | 100 | -> | Plus |
| 2RHet | 198988..199153 | 1..166 | 97 | -> | Plus |
| 2RHet | 239912..240196 | 540..824 | 100 | -> | Plus |
| 2RHet | 240251..240439 | 825..1007 | 96 | -> | Plus |
