UFO07267.5prime Sequence
1105 bp (1007 high quality bases) assembled on 2011-06-24
> UFO07267.5prime
CAGTCGACATGCGGAGCCCAGAAACGGACAGTGAGCACTCGGAAACGGAC
TCCGTCGGCTCCTCCACGGACAGTCAGTCGAGTGGATTGGGCGCGGTGCG
CCACCAGCGACGGAGCGCCCAGCGCACGGATGTCTTCAGCCTCAAGGCCA
TGGCGCCTAGGCCAAATGCCGGACCCGGCGGCTGGTTATGTCTACTGCTG
CCGCTGGCCTTGACCGTCCGCCTGTTGCGCCACGCCACGCCGGCATGCAA
GGACCAGGCCAGGATGCAGTGTCTCCTCACGGTGGCCGCCGGCGGTATGG
CCCTTGAAACGCTGTGTTTCTTCATCTATGCCTTTGTGAAGACGGGCATT
TTGGTTAAATGCCTGGTCAGCCTGCTGCCCGGAGTGGCCACCAGTTTGAG
CTTCTATCTGCTGGTGGACACCTCACTGACCTTCGCCATCATCGTGGGAT
TCGTGATGACCTCTGCTTATCAGCAAATCTATATTTACACGCTACGTGGC
TTCCAGAGATCCTTCACGTATGGCGAAGCCTCGGTTTTCGTCCAGGGACT
GGTGCTCTTCGCTTTGAGTGCCATCCATCGACTAGGTGGATTCTTTTGCG
GCGGTTCTTGGCCAACCGAGGAATTTGATACGCTCAACATGATCATGGTG
AATGCCCTATTTTGCCTGCTGGTGTTCTGCGTGGCTCTCGTCCTCTTTCC
AACGCTGAGGAAGCCATGTCGCTTCTACTTGTGGACGGTGATGCTCCTCT
TGGCTGTCACCTGCATGCCGGTGACGCGACCTCTTCCTCTGCTGGCACTT
GTGCAGTTCCTGCTCCGCGATCAGGAGAGACTGGCCATCTTGGTCTTCTA
TATGCTGCTGGTTGTGCTAACCTGCCTCACAGTCGCCTGGCAAATTGGAA
GCTCCGCTAACGCCAATACACGTGTGCGCAGATCTTCCACCTGCTCATTG
TTATGGTCTATATACCCGGATTGATCTTCGAGTGCGCCCTGCTCTACTTG
GCCACTGGCGTGCGTGCTGCTTCGTGGTCTGACTGCTGCGTTGCTGAGAT
ACCGCCATCGCGATGAACTAGCTGTGCTTTAGCACATCAAGAACAAAGAC
CCGGA
UFO07267.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8311-RA | 1897 | CG8311-RA | 137..1229 | 9..1087 | 5090 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16588327..16588819 | 650..158 | 2465 | 100 | Minus |
| 2R | 25286936 | 2R | 16587893..16588256 | 1012..650 | 1755 | 99.5 | Minus |
| 2R | 25286936 | 2R | 16588896..16589048 | 161..9 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:46:28 has no hits.
UFO07267.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:11 Download gff for
UFO07267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8311-RA | 112..1200 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:06 Download gff for
UFO07267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8311-RA | 128..1216 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:24 Download gff for
UFO07267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8311-RA | 128..1216 | 1..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:24 Download gff for
UFO07267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16587818..16588255 | 651..1076 | 96 | <- | Minus |
| 2R | 16588327..16588816 | 161..650 | 100 | <- | Minus |
| 2R | 16588897..16589057 | 1..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:06 Download gff for
UFO07267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12475323..12475760 | 651..1076 | 96 | <- | Minus |
| arm_2R | 12475832..12476321 | 161..650 | 100 | <- | Minus |
| arm_2R | 12476402..12476562 | 1..160 | 97 | | Minus |
