UFO07268.5prime Sequence
1134 bp (1004 high quality bases) assembled on 2011-06-24
> UFO07268.5prime
CAGTCGACATGGCCAGTCGCCAAGCCGGTTTCGTCCTAGACGCCAAGTCC
ATGGGTCTGAATCCGTCGAGACCTGCATCATCGCCACCGCCACCACCATC
ATCTGCCAGTCAAATGTGTCGGCAAGTGCAGCCAACCGGAACGAGTGCCT
CGCATCCACATCAAGAATCGACGCTAAAAGCCTCATCTCCTGATCGGTGC
ACTGCCAGCACCGAGGCGATGTCCACCGAACATTACCGCTGTCTGATCCA
GAAGCTGCGGGATACCAACGGCGATGCTGGCGATATGAGCTTTGAGCTGA
ACAGCATATTTCTGAAGCGGCTGGACGAGATTGACTGCCTAGATGAGCAC
GAGGGTGATGACATGCACACTTGCCAGTTGCGTCTGGTCACTTTTCAGGA
GTGGGTGGATTTCCTGCTCCACGTGAACAGCGTGATCCTGGGCAACGTGT
CGGACTTGGAGAAGGAGGCGTACAGCAAGATCGTTGCCTGCTGTCAGTCT
GTCCAAGTGCGACAACAGCATACCCTCGAGGAGAATCGTAGGCTGCGTGA
GGACATTTGTGCGATCATAGAACGCGTGCAGCATTCTCCTCACTGCACCG
ACTTTGATTTCAATGGCATTTCCCTAGAGACACTGACCGTTAATCAATTG
CGGGGCGTGGGAAAGGATCCCGCCCACGCGGAATGCGAGAGCGAGAAGAT
GTCCGAGAGCATGAAGTCCTTAGTCGGCGAGATAGCCGCCAAGCATGACG
AGATCGGCGAACTGAAGTCACAGATCAATGCCTTGGACGAGGTTGTACAC
ACGGCCAGGCAGAAGTTACTTTTGAAGGATCAGTGCATAGCACAGCTCAA
TCAACAGCTGCACGAGATCACCCGGTGCATTGAGTCCAGAGATCAGCCAA
AATGGAGGATCGCCCAACGATACACTGACCGCGGACGCGATTACAGCGAA
ATGCTCGAGATCTCTCGATCCACGACACCCAGAGAGCGAATGCTGCGCTG
CTAACGCGGAGCTCATGATCTTCTCGATCTGCACAACAACAGGAGTCGAC
ATGAGAATCGGCGAAACGTGTGTTCTGGCTTATCGAAACTGTATCGAGCG
TGAGAACCTCTGGAAAACTCGAAGCATTCGTATC
UFO07268.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yuri-RQ | 3658 | CG31732-RQ | 566..1713 | 8..1132 | 5080 | 97.4 | Plus |
| yuri-RC | 2555 | CG31732-RC | 566..1713 | 8..1132 | 5080 | 97.4 | Plus |
| yuri-RB | 2920 | CG31732-RB | 101..1248 | 8..1132 | 5080 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15263770..15264127 | 365..8 | 1790 | 100 | Minus |
| 2L | 23513712 | 2L | 15263332..15263665 | 698..365 | 1670 | 100 | Minus |
| 2L | 23513712 | 2L | 15262970..15263130 | 857..697 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 15262436..15262631 | 1039..853 | 515 | 94.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:46:32 has no hits.
UFO07268.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:11 Download gff for
UFO07268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yuri-RB | 564..1618 | 8..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:08 Download gff for
UFO07268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yuri-RB | 101..1155 | 8..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:25 Download gff for
UFO07268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yuri-RB | 101..1155 | 8..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:25 Download gff for
UFO07268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15262970..15263128 | 699..857 | 100 | <- | Minus |
| 2L | 15262384..15262626 | 858..1085 | 91 | <- | Minus |
| 2L | 15263332..15263664 | 366..698 | 100 | <- | Minus |
| 2L | 15263770..15264127 | 8..365 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:08 Download gff for
UFO07268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15262384..15262626 | 858..1085 | 91 | <- | Minus |
| arm_2L | 15262970..15263128 | 699..857 | 100 | <- | Minus |
| arm_2L | 15263332..15263664 | 366..698 | 100 | <- | Minus |
| arm_2L | 15263770..15264127 | 8..365 | 100 | | Minus |
