UFO07270.5prime Sequence
1111 bp (1015 high quality bases) assembled on 2011-06-24
> UFO07270.5prime
CAGTCGACATGTTGACGCACAAAACTTGTCAGGCACGTAAGAAAATGCAG
GTTTCCTTCGTGATACGGGACGCCGAGGAGAAACAGCACCGGAATGGCGT
AAACGCTCTGCAGCTGGATGCCAATAACGGCAAGTTGTACTCCGCCGGTC
GCGACGCCATAATCCGTGTGTGGAATACACGGACGGACTCCAGCGAGAAG
TACATACAATCGATGGAGCACCACAACGACTGGGTCAACGACATAGTACT
TTGCTGTAATGGCAGGAACCTTATTAGCGCCAGCTGTGATACCACGGTGA
AGGTGTGGAACGCCCAGAAAGGCTTCTGCATGTCCACCCTGCGGACCCAT
CGCGACTACGTGCAGGCGTTGGCCTACGCCAAGGATCGGGAACAGGTGGC
CAGCGCTGGACTGGACAAGGCCATCTTCCTGTGGGACGTGAACACACTGA
CCGCGCTCACGGCGAGCAATAACACGGTTACCACCTCTAGTCTAACCGGG
TCCAAGGACTCAATCTACAGCTTGGCCATGAATCCATCGGGCACCGTGAT
TGTGAGCGGGTCCACGGAGAATATACTGCGTATCTGGGATCCCCGCACCT
GTATGCGCAGAATGAAGCTGCGAGGCCATACGGAGAACGTGCGCTGCTTG
GTGGTGTCGCCCGATGGAAACCAGGTGGTGTCTGGCAGTTCCGACGGCAC
GATCAAGGTGTGGAACCTGGGCCAACAGCGCTGTGTTCAAACCATCCACG
TGCACAAGGAGGGCGTGTGGTCGCTGCTGATGAGCGAGAACTTCCAGTAC
ATCATCTCCGGCAGTCGGGATCGCAACATCATTGTGACCGAGATGCGGAA
CCCTAGTAACAAACGCTTGTGTGCGAGGAGCAGGCGCCCGTGCTGAGTCT
GGGCTACAACATCGACAGACTGGGGTGTGGGCCACCACCTGAACTCGGAC
ATTCGCTGTTGAAGCTGCCCATGTACGACAAGGTGCACACCTAATCTCGG
GCGAATGACGCACAATGACCAGGCGGCACTGAGGTGCTGCTTAAAGGTGA
ACGCATTCAAGGATGCCCGTGCTGACGACAACGTTATTCCTACCAGACTC
AAGATCAGTCT
UFO07270.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9062-RC | 2849 | CG9062-RC | 180..1281 | 5..1087 | 4915 | 97.5 | Plus |
| CG9062-RB | 3035 | CG9062-RB | 243..1344 | 5..1087 | 4915 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11282610..11283323 | 980..271 | 3370 | 99.4 | Minus |
| 2R | 25286936 | 2R | 11283386..11283608 | 270..48 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 11283682..11283729 | 52..5 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:45:56 has no hits.
UFO07270.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:06 Download gff for
UFO07270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9062-RB | 224..1285 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:51 Download gff for
UFO07270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9062-RB | 239..1300 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:12 Download gff for
UFO07270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9062-RB | 239..1300 | 1..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:12 Download gff for
UFO07270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11282532..11283323 | 271..1049 | 97 | <- | Minus |
| 2R | 11283386..11283605 | 51..270 | 100 | <- | Minus |
| 2R | 11283684..11283730 | 1..50 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:51 Download gff for
UFO07270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7170891..7171110 | 51..270 | 100 | <- | Minus |
| arm_2R | 7171189..7171235 | 1..50 | 94 | | Minus |
| arm_2R | 7170037..7170828 | 271..1049 | 97 | <- | Minus |
