UFO07271.5prime Sequence
1130 bp (1032 high quality bases) assembled on 2011-06-24
> UFO07271.5prime
CAGTCGACATGTGCACCGCTGGCGTGGTTGATGGTGGTGCTGGGGCCACT
ACAGGTGGTGCTGATGCGGCTGATAATAGTGGAGCTGCGCCCGCCCCAAG
TTCGACGGCCTTGAACCCCCCACAGGTCTCCATTTCCATGAACGAACCGG
AAAACCTGAAACCACCTGCCAAATCCAACTTCCGCCGTTATCTTCAGTGG
ATCCTAGCACCTGTCCTGACCGCCATTTCCGGTCTGATCCTCTACTACCA
AGGGCCTTGGTATGGAGTGGCCACGCTATATGCCGCATTGATATCCATAC
TGCTGGTGCGTCCAGGATGGCGCTGGTTCTACATTGCAGCTGTTACCACA
CCCAGGGATACTGTAGCCCTCTTTGCCTACATCCGTGTGCTGCTCTTCAT
TAAGCGCCAGGAGCGCAAGAACCTGAACATCGGAGACATCTTTGAGTCAA
ATGTGGCCCGGCAGCCGGATAAACTGGCCATTGTCAGTGAGTCCCAGCAG
TGGACCTTCCGCCAGGTGAACGAGCATTCGAACCGGGTGGCCAACGTGTT
CCACAGTCACGGCTACAAAAAGGGCGACGTGGTGGGTCTGCTGCTCGAGA
ATCGCGCCGAATTTGTAGCCACCTGGCTTGGTCTCTCCAAGATCGGCGTG
ATCACGCCGCTGATTAACACAAACCTCCGTGGAGCCTCACTGCAGCACAG
CATTACCGTGGGCCAGTGCACGGCGCTCATTTACGGCGCCAGTTTCCGGT
CGGCCGTGATGGATATCGCCAAGGATCTGCCCGCCCACGTCGGACTGTAT
CAGTTCAACGACGAGTCCAACCAGGAGGTGGTGGCTTCCGAGGGCCTTAG
CCAGGGACTGGCCCAGCAGTTGAACGGCCTTTCTGGAGACGGCGGCCAAG
GATAAGTGGCCGCCGGCGCTTCTCGGGCGGATCATCACGACAGTTGGTCT
ACATCTACACGTCGGCACCACGGGCTTGCCCAAGGCAGCCGTCATCCCGC
ATTCTCGGTACTTTTCATAGCTGCGGCATTCACTACCCGCTGCTCAAGGA
TCAGGATGTGTTCTATACCTCCCTGCCTATATCACCCGCTGGCGGGAGGA
TGAGACATTGCAGGCTTATCTCTCCGGCTC
UFO07271.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44252-RD | 2651 | CG44252-RD | 215..1311 | 9..1095 | 5135 | 98.5 | Plus |
| CG44252-RE | 2745 | CG44252-RE | 309..1405 | 9..1095 | 5135 | 98.5 | Plus |
| CG44252-RB | 2538 | CG44252-RB | 217..1198 | 124..1095 | 4560 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23059352..23059999 | 365..1010 | 3030 | 99.2 | Plus |
| 2R | 25286936 | 2R | 23059053..23059293 | 124..364 | 1205 | 100 | Plus |
| 2L | 23513712 | 2L | 10513191..10513446 | 738..483 | 620 | 82.8 | Minus |
| 2R | 25286936 | 2R | 23057517..23057635 | 9..127 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:46:01 has no hits.
UFO07271.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:07 Download gff for
UFO07271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30194-RD | 185..1298 | 1..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:01:53 Download gff for
UFO07271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44252-RE | 301..1414 | 1..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:13 Download gff for
UFO07271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44252-RE | 301..1414 | 1..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:13 Download gff for
UFO07271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23057509..23057633 | 1..125 | 97 | -> | Plus |
| 2R | 23059055..23059293 | 126..364 | 100 | -> | Plus |
| 2R | 23059352..23059996 | 365..1007 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:01:53 Download gff for
UFO07271.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18945032..18945156 | 1..125 | 97 | -> | Plus |
| arm_2R | 18946578..18946816 | 126..364 | 100 | -> | Plus |
| arm_2R | 18946875..18947519 | 365..1007 | 99 | -> | Plus |
