UFO07273.5prime Sequence
1103 bp (1012 high quality bases) assembled on 2011-06-24
> UFO07273.5prime
CAGTCGACATGAGCAGGACCTCCAGCCGCTCGCTCTTCCTGCCGCTCTGC
CTGCTCGTCCTGTCCGCGCTAAATGGCCCAGCGGCGGCGGCATCTCGCGT
CCGCGTCAGCTCCTCGACCACCATGACCAGGAACATCGAGGAGGAGAATG
CCCTACTTTTACTTTTAGCTGGACCTCCCGTGCTATCTGAGTCCATAATG
GGTACGGTCGGCCGGCTGCCCTGCAACGTCACCCCGCCCATTTACGAGGA
TCGAGTGGCGCTGGTTATCTGGTACAAAGTTGGCCTGAAGACTCCCATTT
ACAGTGTGGACACACGCGACTCGAACTTCGCCCAGGGAACGCACTGGTCG
GATGAGACCTACCGGGAGCGGCTCTCCTTCCACGTGGAAGGACGTGCTGG
CACGCTGACCATCAAGTCAACCACGGAGGACGACACGGGCGAGTATCGCT
GCCGCGTCGACTTCCAGAAGAGTCCGACTCGCAACTCCAAAGTGAATTTA
ACTGTCATAATTCCGCCCGAGTCGGTGATTATATTGGACAGCAAGGGTGT
GACCATCGAGGATCACACGCTGGGTCCTTACAACGAGGGCTCTGGGATAA
ACATCACGTGCGTGGCCATCGGCGGCCGCCCGCAGCCGAGGGTTACCTGG
CTGCATGGAAACACCGTCTACAAGAATGCCAGTGTGGGCCAACCCCTGTC
CGAGCGACGGGTGGGCAATACCCTGTCCTTGGCTCGACTGGAGCGCAGGA
ATCTTCACATGCAGCTAACGTGCCGGGCGGAGAACAATAATTTGACAACG
CCAATTATCAGCAGCGTCGTCCTCGACATGAACCTGCGTCCTTTGATTGT
GAAGCTGCAGGGGGAGAATCGAGCTCTGTCGGCGGGGAATTCTTATCAGC
TCAGTTGCGTTGTCATCGGAGCACGTCCAGCGCCGACGATTACCTGTGGA
GGCAGTACCCCCATGAGATACTCACGAGATGCTACACGGACGTATCTGAC
TACTCGGTGCTGACATCACGCCCACATCGATGACGCGCAGTCTCTCGGTC
CGGCGGAACAAGCCATGAACCCCTGAATTCGGATGAGACGCTGTAATGTA
CTA
UFO07273.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12484-RB | 5113 | CG12484-RB | 550..1588 | 8..1034 | 4905 | 98.8 | Plus |
| CG12484-RA | 3109 | CG12484-RA | 550..1588 | 8..1034 | 4905 | 98.8 | Plus |
| CG12484-RE | 4936 | CG12484-RE | 550..1567 | 8..1034 | 4580 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20464618..20464828 | 624..834 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 20462001..20462209 | 302..510 | 1045 | 100 | Plus |
| 2R | 25286936 | 2R | 20429634..20429776 | 8..150 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 20459479..20459620 | 163..304 | 680 | 98.6 | Plus |
| 2R | 25286936 | 2R | 20463860..20463974 | 511..625 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 20464926..20465037 | 835..946 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:46:42 has no hits.
UFO07273.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:13 Download gff for
UFO07273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12484-RC | 547..1594 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:13 Download gff for
UFO07273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12484-RA | 544..1591 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:29 Download gff for
UFO07273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12484-RA | 544..1591 | 1..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:29 Download gff for
UFO07273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20462004..20462209 | 305..510 | 100 | -> | Plus |
| 2R | 20463860..20463973 | 511..624 | 100 | -> | Plus |
| 2R | 20464926..20465077 | 835..980 | 96 | -> | Plus |
| 2R | 20464619..20464828 | 625..834 | 100 | -> | Plus |
| 2R | 20429628..20429776 | 1..150 | 97 | -> | Plus |
| 2R | 20431843..20431863 | 151..171 | 100 | -> | Plus |
| 2R | 20459488..20459620 | 172..304 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:13 Download gff for
UFO07273.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16352431..16352582 | 835..980 | 96 | -> | Plus |
| arm_2R | 16317133..16317281 | 1..150 | 97 | -> | Plus |
| arm_2R | 16319348..16319368 | 151..171 | 100 | -> | Plus |
| arm_2R | 16346993..16347125 | 172..304 | 100 | -> | Plus |
| arm_2R | 16349509..16349714 | 305..510 | 100 | -> | Plus |
| arm_2R | 16351365..16351478 | 511..624 | 100 | -> | Plus |
| arm_2R | 16352124..16352333 | 625..834 | 100 | -> | Plus |
