UFO07274.5prime Sequence
1117 bp (1000 high quality bases) assembled on 2011-06-24
> UFO07274.5prime
CAGTCGACATGCAGAATTCTCCGGCTCCGTGTGCCTGGTACTTGCCCTGG
TCCCTGGCCGCCCAGCAGCACCAGCAAAAGATGCTGCAAATGCAGTCGCC
GTTTCTGGACAAGATGGGCGCCACATCGGTGGGCGGCATCTTCGCTGGCC
AGCCGCAGATGCAGCAACAATTGTCGCCCAATACGGCAGCAGCACCGCCG
GCAAACTATCAGCAGCCCGCTTTGCATCCAAGCGCCGCACCAGGCGCACC
ACACTTCCACATGGGATCCCCGTATAGCCATCTGGCACCGCAGCTCCTCA
ACGCCGGACAGCTGAACCAGAACGCACTGATGCACTCCGCCATGTTCTCT
TCCCTGCCACTTGGTGCGTACTATGCACCCGCCGCCGGCGCAGGTCACTC
GGCCTTTGGTGGCGTTCCCCTGACCACGGCTGCCCAGCAATCTCTATTGG
CCGCCACCGGAGGAGCAACTGCTGGCCATTTGGCCAACCAGCAGACGACG
GCTCAAGTGCCCGTCCAGGTGCCCGTGCAAATGGCCCAACGGACAGCTCC
GGCCGCCTGCTCCATGGTCCAGCCACTTAACTGCCTGCCGCACCAGGAAC
TGAATCACCTGTCGTCCATCAATCTCAACCTGCTGCGCAGTCCGGCGCCT
CCGCTCCCAGCCATTCAGGTCTTGCCAAGTGCCGAGGTGCCGATTAATAA
GAAGACTACTTCTCCCAGGGACTCTGAGAATCTTAAAATCAAAGTTCCAG
AAAAGCGGAAAACAGACGATAATGATCAGATAAAAGAGCTAAAGAAAGCT
AAACTGGAGACAAAAGCATTGAAAGCTAAGACGCCGGGATTCACGGATGA
AGATACCAGGAAACATCCTACTATATGGAAACGGTCTACGCAAGGTGTAT
CCGTACTACTTTACATTCACACATTTACAAAAGTCGCTGGGTGGGCGAAA
GATATTGATTTATTCTCGCGAGAATTTCGGGCACATCCCGCTGAGATATG
ACGTTGTATCAAACTGCACATTGACAGTCACTTTGAAAGTACCATGACTA
TTCGCTGAAACTAACGATCTTTCTCGCCAATTAGTCAAAGACCGAGGTTC
TGTACCTGTCAAAATAA
UFO07274.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RluA-1-RC | 2914 | CG31719-RC | 224..1348 | 9..1112 | 4930 | 97.2 | Plus |
| RluA-1-RB | 3207 | CG31719-RB | 517..1641 | 9..1112 | 4930 | 97.2 | Plus |
| RluA-1-RA | 3073 | CG31719-RA | 383..1507 | 9..1112 | 4930 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10471476..10472171 | 704..9 | 3480 | 100 | Minus |
| 2L | 23513712 | 2L | 10466357..10466452 | 798..703 | 465 | 99 | Minus |
| 2L | 23513712 | 2L | 10466043..10466159 | 995..883 | 370 | 95.7 | Minus |
| 2L | 23513712 | 2L | 10466218..10466302 | 881..798 | 345 | 96.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:46:47 has no hits.
UFO07274.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:13 Download gff for
UFO07274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RluA-1-RC | 383..1451 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:16 Download gff for
UFO07274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RluA-1-RA | 373..1441 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:30 Download gff for
UFO07274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RluA-1-RA | 373..1441 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:30 Download gff for
UFO07274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10465977..10466158 | 884..1051 | 91 | <- | Minus |
| 2L | 10466215..10466302 | 798..883 | 95 | <- | Minus |
| 2L | 10466358..10466450 | 705..797 | 98 | <- | Minus |
| 2L | 10471476..10472176 | 1..704 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:16 Download gff for
UFO07274.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10465977..10466158 | 884..1051 | 91 | <- | Minus |
| arm_2L | 10466215..10466302 | 798..883 | 95 | <- | Minus |
| arm_2L | 10466358..10466450 | 705..797 | 98 | <- | Minus |
| arm_2L | 10471476..10472176 | 1..704 | 99 | | Minus |
