UFO07275.5prime Sequence
1119 bp (999 high quality bases) assembled on 2011-06-24
> UFO07275.5prime
CAGTCGACATGCCTCATACACACAGCAGGCATGGATCATCAGGAGATGAT
TTATGCAGTACTGATGAAGTGAAGATTTTTAAAGACGAAGGAGATCGCGA
GGATGAAAAAATATCATCTGAGAACTTATTAGTTGAAGAAAAGTCTAGCT
TAATAGATTTAACTGAAAGTGAGGAAAAGGGTCACAAAATTTCAAGGCCG
GACCACAGCCCTGTTTTTAATAAGCTGGACACCCACGCCCCTAGCTTTAA
CATGGGTTACTTAGTTTCTCCTTATTCGTATGCCAATGGTTCTCCAAGTG
GCTTACCGGTAACTATGGCCAACAAAATTGGACTGCCTCCGTTTTTTTGT
CACAATGCTGATCCGTTATCAACACCACCACCAGCGCATTGCGGAATACC
TCCATATCAACTGGATCCTAAGATGGGCTTAACTCGACCAGCGCTATACC
CATTTGCGGGAGGTCAATATCCTTACCCAATGCTAAGTTCAGATATGTCT
CAAGTGGCATCATGGCACACTCCTTCTGTTTATTCTGCATCTAGTTTTAG
AACTCCTTATCCCTCCTCACTACCAATAAATACTACACTTGCAAGTGATT
TTCCATTCCGTTTTTCACCTAGCCTTTTACCTTCAGTACATGCCACATCG
CACCACGTTATAAATGCTCATTCTGCTATTGTGGGGGTTAGCTCTAAACA
AGAATGCGGTGTTCAGGACCCAACAACGAATAATAGATATCCAAGGAACC
TGGAAGCAAAGCACACATCAAATGCGCAATCAAATGAATCCAAGAGACAA
CAAATGATAAAAAAAACCCCATATTAAGAAGCCACTAAATGCGTTCATGC
TCTATATGAAGGAATGCGTGCTAAGTTGTTGCTGAATGCACTCTGAAGAT
CGGCTGCGATTAATCAGATTTTAGAGACGTGGCACGAACTTTCCCGCGAA
GAACAAAGCAAATATTACGAAAAGCTCGACAGAGCGCCATTGCATATGGA
TTGTATCGGGTGGAGCGCACGAAATAACTATGGTACGTGTCAAAAAGAAA
AAGCGAAAAAGGACGATCGACAACGAATCCGAGCATATATGAAAAATGGC
CCGTCGTCGGACTAATCAA
UFO07275.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pan-RS | 3101 | CG34403-RS | 697..1783 | 8..1075 | 4945 | 98 | Plus |
| pan-RR | 8472 | CG34403-RR | 438..1524 | 8..1075 | 4945 | 98 | Plus |
| pan-RA | 4129 | CG34403-RA | 306..1392 | 8..1075 | 4945 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 72429..72595 | 8..174 | 835 | 100 | Plus |
| 4 | 1348131 | 4 | 87015..87167 | 594..746 | 765 | 100 | Plus |
| 4 | 1348131 | 4 | 94421..94607 | 744..924 | 670 | 96.8 | Plus |
| 4 | 1348131 | 4 | 82637..82747 | 317..427 | 540 | 99.1 | Plus |
| 4 | 1348131 | 4 | 75068..75166 | 220..318 | 495 | 100 | Plus |
| 4 | 1348131 | 4 | 85711..85800 | 426..515 | 450 | 100 | Plus |
| 4 | 1348131 | 4 | 85852..85933 | 514..595 | 410 | 100 | Plus |
| 4 | 1348131 | 4 | 94836..94975 | 929..1060 | 320 | 93.6 | Plus |
| 4 | 1348131 | 4 | 72815..72867 | 172..224 | 250 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:46:52 has no hits.
UFO07275.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:14 Download gff for
UFO07275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RB | 420..1512 | 8..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:19 Download gff for
UFO07275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RA | 306..1398 | 8..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:32 Download gff for
UFO07275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RA | 306..1398 | 8..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:32 Download gff for
UFO07275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 85853..85933 | 515..595 | 100 | -> | Plus |
| 4 | 82638..82746 | 318..426 | 99 | -> | Plus |
| 4 | 85712..85799 | 427..514 | 100 | -> | Plus |
| 4 | 87017..87166 | 596..745 | 100 | -> | Plus |
| 4 | 94423..94615 | 746..929 | 95 | -> | Plus |
| 4 | 72429..72594 | 8..173 | 100 | -> | Plus |
| 4 | 72817..72862 | 174..219 | 100 | -> | Plus |
| 4 | 75068..75165 | 220..317 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:19 Download gff for
UFO07275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 106479..106559 | 515..595 | 100 | -> | Plus |
| arm_4 | 107643..107792 | 596..745 | 100 | -> | Plus |
| arm_4 | 115049..115241 | 746..929 | 95 | -> | Plus |
| arm_4 | 93055..93220 | 8..173 | 100 | -> | Plus |
| arm_4 | 93443..93488 | 174..219 | 100 | -> | Plus |
| arm_4 | 95694..95791 | 220..317 | 100 | -> | Plus |
| arm_4 | 103264..103372 | 318..426 | 99 | -> | Plus |
| arm_4 | 106338..106425 | 427..514 | 100 | -> | Plus |
