UFO07277.5prime Sequence
1115 bp (1013 high quality bases) assembled on 2011-06-24
> UFO07277.5prime
CAGTCGACATGTTACACGAGGCTCTGATGCTCGAGATCTACAGACAGGCG
CTAAATGCCGGAGCTCTGCCCACAGCTCGACCACGTTCCACTGAGTCGGC
GAATTCCAGCGAGCGGTGTCCGTCACACGACTCAAACTCCTCGGAACATG
GTGGTGGTGCTGGCAGCGGCGGAGTAGGTCATCGGTTGGACGCAGCCGCT
CTATCAACCGGGGTGATGCCCGGAGAAGGGCCCACCACTCTGCACTCATC
ATTTCCAGCAGTTCCGCAGTCCCTGCCCTCCCAGCCGCCCTCAATGGAGG
CGTACCTGCACATGGTGGCAGCAGCCGCTCAGCAGTATGGATTCCCTTTG
GCCGCTGCTGCAGCGGCTGGGGCGGGTCCACGGCTGCCACTCCCACTCGC
TAATGAGGCGGCGGCTCCATTTAAGCTTCCCCCACAGGCTTCGCCCACTG
CATCGAGTAATAACTCGGAGGCTCTAGACTTTCGCACCAATCTTTATGGA
AGGGCGGAATCGGCTGAGCCACCTGCCTCTGAGGGCGAGGAGGAGGAATT
CGATGACGGTGCCAACAATCCACTCGATCTCTCTGTAGGTACCCGGAAAC
GGGGTCACGAATCGGAGCCTCAACTTGGTCACATTCAGGTTAAGAAGATG
TTCAAGTCAGACAGCCCACCCGCGAATTCCGTGGCTTCACCCTCAGCCAG
TCAACTGTTGCCAGGAGTTAATCCTTATCTTGCCGCTGTGGCAGCCGCCA
ATATTTTTCGAGCGGGTCAATTCCCTGACTGGAATAGCAAAAATGATTTG
GTTGTGGATCCGCTGGAAAAGATGTCTGATATTGTAAAGGGTGGAGCGAG
TGGAATGGGTACCAAGGAAAAATGCACTCCTCCAAGGCCACACACACAGG
CAGCATCTCAGCCGCCAAAAGTCCGGTTCACCACACCCAACCAAATTCCG
ATCAGGAGAGGTCGAGCGGTGCTGCTGGTAGTGCGCATGACAAAGCAGCA
ATAACATTTGCATCGCACTGCAAACAAGGTGGTGCCAGTCGGTGTTCAAA
TGTGTTGTGGTGCAGCTAGTCCCTACCTGAGCCTGAACACCATTGAGACG
CAAGCATTGCGCGTG
UFO07277.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tsh-RA | 4732 | CG1374-RA | 1214..2291 | 9..1064 | 4715 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21833370..21834260 | 61..945 | 4180 | 99 | Plus |
| 2L | 23513712 | 2L | 21829806..21829858 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:47:01 has no hits.
UFO07277.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:15 Download gff for
UFO07277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsh-RA | 1212..2199 | 9..983 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:24 Download gff for
UFO07277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsh-RA | 1214..2201 | 9..983 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:35 Download gff for
UFO07277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tsh-RA | 1214..2201 | 9..983 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:35 Download gff for
UFO07277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21829806..21829858 | 9..61 | 100 | -> | Plus |
| 2L | 21833371..21834324 | 62..998 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:24 Download gff for
UFO07277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21829806..21829858 | 9..61 | 100 | -> | Plus |
| arm_2L | 21833371..21834324 | 62..998 | 98 | -> | Plus |
