UFO07278.5prime Sequence
1131 bp (1038 high quality bases) assembled on 2011-06-24
> UFO07278.5prime
CAGTCGACATGGCTATGGCTGAGTTTGTTTTTTGCCGGCCATTGTTTGGG
CTCGCCATTGTTCTCCTGGTGGCGCCAATTGATGCCGCCCAGAGGCACAC
TGCCTCGGATAATCCCTCGACGTACAACATTGGCGGCGTACTGAGCAATT
CCGACAGCGAGGAGCACTTTAGCACCACAATAAAGCACCTCAACTTCGAT
CAGCAGTATGTGCCGCGGAAGGTCACCTACTACGACAAAACCATCCGCAT
GGACAAGAATCCCATCAAGACGGTCTTCAATGTGTGCGACAAGCTCATCG
AGAATCGGGTGTACGCCGTAGTCGTTTCGCATGAGCAAACCTCAGGTGAT
TTGTCGCCGGCGGCCGTGAGTTATACAAGCGGATTCTATTCAATTCCCGT
CATTGGCATCTCCTCGCGGGACGCGGCCTTCTCCGACAAGAACATCCACG
TCTCCTTCCTGCGGACGGTGCCGCCGTACTACCACCAGGCGGATGTCTGG
CTGGAGATGCTCAGCCACTTTGCCTACACGAAGGTAATCATCATCCACAG
CTCCGACACGGATGGCCGGGCCATCCTGGGTCGCTTCCAGACGACATCGC
AGACTTACTACGACGACGTGGATGTGCGCGCCACCGTGGAGCTGATTGTC
GAGTTCGAGCCCAAGCTGGAGAGCTTCACCGAGCACCTCATCGACATGAA
GACCGCCCAGTCCAGGGTCTACCTCATGTACGCGAGCACGGAAGACGCTC
AAGTAATCTTCCGCGATGCCGGGGAGTACAACATGACCGGTGAGGGTCAC
GTGTGGATTGTAACGGAGCAGCGCTGTTCTCCAACAACACTCCGGACGGA
GTACTGGGTCTCCAGCTGGAGCACGCCCATAGTGACAAGGGGCACATCAG
GACAGCGTTTATGTTTTGGCGTCGCCATCAAGAGATGATTCCAACGAGAC
CATTGCCGAGCTCCCAAGATTGCGGCGATCGGCCGTTAACTGGAATCGGG
CAAGCGACTGTTTCAGTACCCTCAAAGCGTATATCACGGGCGAAACGGTC
AGGTGCTCGATGAACATGTGACGATCTACGCCCGGCTACGATGTGATCCA
CATCGGAACCACAGAAAGATCATGTTGAGTC
UFO07278.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmdar1-RA | 4170 | CG2902-RA | 240..1352 | 8..1103 | 5000 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5514421..5514649 | 536..308 | 1145 | 100 | Minus |
| 3R | 32079331 | 3R | 5514104..5514308 | 736..532 | 1025 | 100 | Minus |
| 3R | 32079331 | 3R | 5516212..5516389 | 185..8 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 5513251..5513418 | 901..735 | 790 | 99.4 | Minus |
| 3R | 32079331 | 3R | 5516016..5516142 | 310..184 | 635 | 100 | Minus |
| 3R | 32079331 | 3R | 5513087..5513188 | 993..898 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:47:06 has no hits.
UFO07278.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:16 Download gff for
UFO07278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmdar1-RA | 230..1363 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:26 Download gff for
UFO07278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmdar1-RA | 234..1367 | 1..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:36 Download gff for
UFO07278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmdar1-RA | 234..1367 | 1..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:36 Download gff for
UFO07278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5513251..5513416 | 737..901 | 99 | <- | Minus |
| 3R | 5514104..5514306 | 534..736 | 100 | <- | Minus |
| 3R | 5514424..5514648 | 309..533 | 100 | <- | Minus |
| 3R | 5516018..5516140 | 186..308 | 100 | <- | Minus |
| 3R | 5516212..5516392 | 1..185 | 97 | | Minus |
| 3R | 5513080..5513185 | 902..999 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:26 Download gff for
UFO07278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1338802..1338907 | 902..999 | 92 | <- | Minus |
| arm_3R | 1338973..1339138 | 737..901 | 99 | <- | Minus |
| arm_3R | 1339826..1340028 | 534..736 | 100 | <- | Minus |
| arm_3R | 1340146..1340370 | 309..533 | 100 | <- | Minus |
| arm_3R | 1341740..1341862 | 186..308 | 100 | <- | Minus |
| arm_3R | 1341934..1342114 | 1..185 | 97 | | Minus |
