UFO07279.5prime Sequence
1176 bp (1048 high quality bases) assembled on 2011-06-24
> UFO07279.5prime
CAGTCGACATGTCGCAGCATTTCACATCGATATTTGAGAACCTGCGATTC
GTGACCATCAAACGTTCGACAAATGCGCAACAGCAACAGCAGCAGCAGCA
ACAGCAACTGCAGCAGCAGCAGCAGCAGCTGCAGCAACAGAAGGCACAGA
CACAGCAACAAAATAGCAGAAAAATCAAAACTCAAGCAACGCCAACGTTG
AATGGCAATGGGCTCTTGAGCGGCAATCCAAATGGCGGAGGCGGTGACTC
CTCGCCCAGCCATGAAGTGGACCATCCGGGTGGAGCACAAGGAGCTCAAG
CAGCAGGAGGCTTGCCATCTTCAAGTGGCACGCCATTGAGGCACCACAAG
CGCGCCAGTATCTCCACAGCATCGCCTCCAATCCGCGAACGGCGTGGCAC
CAACACCAGCATCGTGGTCGAACTGGATGGCAGTGGCAGCGGGAGTGGGA
GTGGCGGTGGTGGCGTTGGCGTTGGTCAGGGTGCGGGTTGTCCTCCCTCG
GGCAGCTGCACTGCGTCCGGAAAAAGTTCGCGGGAACTATCGCCGTCGCC
GAAAAACCAACAGCAGCCCAGAAAGATGTCACAGGATTATCGGTCGCGTG
CCGGCAGTTTTATGCACCTGGACGACGAGGGACGCAGTCTGCTGATGCGC
AAGCCGATGAGACTGAAGAACATCGAGGGCAGGCCGGAGGTCTACGACAC
GCTGCACTGCAAGGGTCGCGAGATTCTTTCCTGCTCGAAGGCCACCTGTA
CGAGCAGCATTATGAACATTGGCAATGCGGCGGTGGAGGCCAGGAAATCC
GATCTGATCCTCGAACACGCCAAGGACTTCCTCGAGCAGTACTTTACATC
GATAAAGCGTACATCATCTACCGCCCACGAGACGCGATGGAAACAGTGCG
CCAGAGCATTGAGACCACTGGACATTATCAGCTAACCGAAACGGAACTAA
TTTATGGTGCCAAATTGGCCTGGCGCAATTCTTCACGTTGCATTGGCCGA
TACATGGTCGGAGTTGCAGGTTTTTGACTGTCGGTATGTGAAACAACAAG
TTGCCATGTTTGAAGCCATTTGCATCCATTTAAATATGCACGAATAAGGC
CACCTGAAATCGGCCATACGATATTTCCCAACGCACGAATGTGCCAAGCT
GATATCGCATTTGAATACAATTATAA
UFO07279.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nos-RA | 4696 | CG6713-RA | 402..1564 | 9..1163 | 5325 | 97.9 | Plus |
| Nos-RF | 4805 | CG6713-RF | 402..1564 | 9..1163 | 5325 | 97.9 | Plus |
| Nos-RK | 4000 | CG6713-RK | 416..868 | 719..1163 | 1775 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10831329..10831927 | 607..9 | 2995 | 100 | Minus |
| 2L | 23513712 | 2L | 10825949..10826087 | 859..721 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 10825695..10825837 | 1000..859 | 665 | 99.3 | Minus |
| 2L | 23513712 | 2L | 10830600..10830718 | 722..604 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:47:10 has no hits.
UFO07279.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:17 Download gff for
UFO07279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nos-RB | 505..1608 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:29 Download gff for
UFO07279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nos-RF | 394..1497 | 1..1099 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:39 Download gff for
UFO07279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nos-RF | 394..1497 | 1..1099 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:39 Download gff for
UFO07279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10825674..10825836 | 860..1019 | 97 | <- | Minus |
| 2L | 10825949..10826085 | 723..859 | 100 | <- | Minus |
| 2L | 10830600..10830714 | 608..722 | 100 | <- | Minus |
| 2L | 10831329..10831935 | 1..607 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:29 Download gff for
UFO07279.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10825674..10825836 | 860..1019 | 97 | <- | Minus |
| arm_2L | 10825949..10826085 | 723..859 | 100 | <- | Minus |
| arm_2L | 10830600..10830714 | 608..722 | 100 | <- | Minus |
| arm_2L | 10831329..10831935 | 1..607 | 99 | | Minus |
