UFO07280.5prime Sequence
1132 bp (1035 high quality bases) assembled on 2011-06-24
> UFO07280.5prime
CAGTCGACATGGCTGAGTTGGACGATCAATTCGAGACCACGGATTCCGGC
GCATCGACGACCTATCCCATGCAATGTTCGGCATTGCGCAAAAACGGATT
CGTCATGCTGAAGTCGCGGCCATGCAAGATTGTCGAGATGTCTACTTCAA
AGACTGGAAAGCACGGACACGCCAAGGTTCATATGGTTGGCATTGATATT
TTCTCTAACAAGAAATATGAAGATATTTGCCCATCTACTCATAACATGGA
TGTGCCCAATGTCAAAAGGGAGGACCTTCAGTTGATTGCTATTAGTGACG
ATAGCTTCCTTACATTGATGACCGAGAGCGGAGATCTGCGTGAAGACTTG
AAGGTTCCAGAGGGCGAATTGGGTGAACAATTGCGTTTAGATTTTGATAG
TGGCAAGGACTTACTGTGCACCGTTCTCAAGGCGTGCGGAGAGGAGTGCG
TTATCGCAATTAAAACCAATACTGCTCTGGACAAAGCAAGCTTTCTAGAC
CATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAA
TCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGC
TTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAAC
AAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCC
AAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTAC
TGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGC
ATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
AATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCC
ACGTTTAAATCAAACTGGTGAAACTCCCCCAGGGATTGGCTGAGACGAAA
AACATATTCTCATAAACCCTTTAGGAAATAGGCCAGGTTTCACGTACCGC
CACATCTTGCGATTTATGGTGTAGAAACTGCCGGAATCGTGTGCTTTCAC
TCAGAGCGATGAAACGTTCAGTTGCTCATGAACGGTGTAACAGGGTGAAC
TATTCAATACACAGCTCACGTCTTCATTGCCA
UFO07280.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-5A-RA | 752 | CG3186-RA | 50..533 | 2..485 | 2390 | 99.6 | Plus |
| eIF-5A-RB | 747 | CG3186-RB | 108..584 | 9..485 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24058486..24058691 | 9..214 | 1030 | 100 | Plus |
| 2R | 25286936 | 2R | 24058932..24059133 | 215..416 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 24059195..24059264 | 416..485 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:47:16 has no hits.
UFO07280.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:17 Download gff for
UFO07280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-5A-RA | 77..567 | 1..491 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:30 Download gff for
UFO07280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-5A-RA | 48..538 | 1..491 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:41 Download gff for
UFO07280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-5A-RA | 48..538 | 1..491 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:41 Download gff for
UFO07280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24058932..24059133 | 215..416 | 100 | -> | Plus |
| 2R | 24059196..24059264 | 417..485 | 100 | == | Plus |
| 2R | 24058478..24058691 | 1..214 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:30 Download gff for
UFO07280.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19946001..19946214 | 1..214 | 98 | -> | Plus |
| arm_2R | 19946455..19946656 | 215..416 | 100 | -> | Plus |
| arm_2R | 19946719..19946787 | 417..485 | 100 | == | Plus |
