UFO07281.5prime Sequence
1139 bp (872 high quality bases) assembled on 2011-06-24
> UFO07281.5prime
CAGTCGACATGGCGCAACCGCCGCCAGATCAAAACTTTTACCATCATCCG
CTGCCCCACACGCACACACATCCGCATCCGCACTCCCATCCGCATCCGCA
CTCGCATCCGCACCCACATCACCAACATCCGCAGCTTCAGTTGCCGCCAC
AATTCCGAAATCCCTTCGATTTGCTTTTCGATGAGCGAACGGGAGCGATA
AACTACAACTACATACGTCCGTATCTGCCCAACCAGATGCCCAAGCCAGA
TGTCTTTCCCTCAGAGGAGCTGCCCGACTCTCTGGTGATGCGGCGACCAC
GTCGCACCCGCACCACTTTTACCAGCTCTCAAATAGCAGAGCTGGAGCAG
CACTTTCTGCAGGGACGATACCTCACAGCCCCCCGACTTGCGGATCTGTC
AGCGAAACTAGCCCTGGGCACAGCCCAGGTGAAGATATGGTTTAAGAACC
GTCGGCGTCGTCACAAGATCCAATCGGATCAGCACAAGGACCAGTCCTAC
GAGGGGATGCCTCTCTCGCCGGGTATGAAACAGAGCGATGGCGATCCCCC
CAGCTTGCAGACTCTTAGCTTGGGTGGAGGAGCCACGCCCAACGCTTTGA
CTCCGTCACCCACGCCCTCAACGCCCACTGCACACATGACGGAGCACTAC
AGCGAGTCATTCAACGCCTACTACAACTACAATGGAGGCCACAATCACGC
CCAGGCCAATCGTCACATGCACATGCAGTATCCTTCCGGAGGGGGGGCCA
GGACCTGGGTCGACCAATGTCAATGGCGGCCATTTCTTCCAGCAGCAGCA
GGTCCATAATCACCAGCAGCAACTGCACCACCAGGGCAACCACGTGCCGC
ACCAGATGCAGCAGCAGCAACAGCATCTCAGCAGCAGCAGTACCATCACT
TTGACTTCCAGCAAAGCAAGCCAGCGCCTGTCGCGTCCTGGTCAGGGACG
AACGGAGGCCTACTACACTCAACAGCTCGTACTACATGCGATCGGGTACT
GTCTGGGCGCCACTGCATCGGCATCCGCTGTGGTCCGAAGCCGCTGCCTC
GACGGGCCTCCGAGGTCTAGCAGGCATACCAACCAGAAATGACAAAGTCC
AGTCGGTGTGGATCGGCATCGGGCGGACTGGCCCATCCA
UFO07281.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bcd-RG | 2514 | CG1034-RG | 196..1318 | 9..1128 | 5015 | 97.2 | Plus |
| bcd-RE | 2536 | CG1034-RE | 196..1340 | 9..1128 | 4785 | 95.3 | Plus |
| bcd-RD | 2499 | CG1034-RD | 196..1303 | 9..1128 | 4780 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6757612..6758434 | 1069..247 | 3525 | 97.6 | Minus |
| 3L | 28110227 | 3L | 27540974..27541642 | 247..915 | 3145 | 98.7 | Plus |
| 3L | 28110227 | 3L | 27850063..27850731 | 247..915 | 3145 | 98.7 | Plus |
| 3R | 32079331 | 3R | 6759107..6759271 | 173..9 | 825 | 100 | Minus |
| 3L | 28110227 | 3L | 27540137..27540298 | 9..170 | 780 | 98.8 | Plus |
| 3L | 28110227 | 3L | 27849226..27849387 | 9..170 | 780 | 98.8 | Plus |
| 3R | 32079331 | 3R | 6758472..6758548 | 249..173 | 385 | 100 | Minus |
| 3L | 28110227 | 3L | 27540860..27540936 | 173..249 | 385 | 100 | Plus |
| 3L | 28110227 | 3L | 27849949..27850025 | 173..249 | 385 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:47:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6962 | 790..933 | 231 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6849 | 790..898 | 221 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6888 | 790..898 | 221 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6916 | 790..914 | 199 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6869 | 781..928 | 194 | 63.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1163 | 765..885 | 188 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..6944 | 790..897 | 183 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2533 | 790..913 | 181 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2464 | 790..913 | 173 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2840..2976 | 789..934 | 157 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2549 | 790..883 | 124 | 61.9 | Plus |
UFO07281.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:18 Download gff for
UFO07281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RG | 207..1280 | 9..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:33 Download gff for
UFO07281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RG | 196..1269 | 9..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:42 Download gff for
UFO07281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bcd-RG | 196..1269 | 9..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:42 Download gff for
UFO07281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6758472..6758547 | 174..249 | 100 | <- | Minus |
| 3R | 6759107..6759271 | 9..173 | 100 | | Minus |
| 3R | 6757646..6758431 | 250..1033 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:33 Download gff for
UFO07281.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2583368..2584153 | 250..1033 | 98 | <- | Minus |
| arm_3R | 2584194..2584269 | 174..249 | 100 | <- | Minus |
| arm_3R | 2584829..2584993 | 9..173 | 100 | | Minus |
