UFO07282.5prime Sequence
1162 bp (1049 high quality bases) assembled on 2011-06-24
> UFO07282.5prime
CAGTCGACATGAGAGATTGGCAAACATTCCCGGACCTCCAAAAAAAGAAA
GTTTCGCGTGACCATTTAAATTGCCCTGCAACAATGGCAGGTTCAAACGT
TTTGTGGCCAATACTCCTGGCCGTGGTGCTGCTCCAAATATCCGTGGCAT
TCGTGAGTGGAGCGGCCAGTGGTGGGGTAGTCCTTAGCGACGTGAACAAC
ATGTTGCGCGATGCCAAGGTGGTGACCTCGGAGAAACCCGTTGTGCACTC
AAAACAGGAAACGGAAGCGCCGGAATCCAGCGTGGAGCTGCTCCGCTTCG
TCGATGATGACGAGGATAGCGAGGACATCAGCTCCATTGAACGGCAGGAT
GGCAGGACAATGGAGAGCAAAAAAATGGCCGATCAGGTGCGCCTGTTGAC
CAAGCAGCTCAACGCCCTGATGCTGCGGCGCCGCGAGGATTACGAGATGC
TGGAGCACAATCTGCGCAAATCCCTGCGGCTCACCACGAATGCGAACAGC
GTGGACGCCGACATGCGCAGCGAACTGAACCAACTCAGGGAGGAGCTGGC
CGCGCTGCGCTCCTCGCAGAGTGGCAACAAGGAGCGCTTGACCGTCGAGT
GGCTGCAGCAGACGATCTCCGAGATCCGCAAACAGCTGGTGGATCTGCAA
AGGACGGCCAGCAACGTGGCCCAGGATGTCCAGCAGCGCAGCTCCACCTT
TGAGGATCTGGCCACCATTCGCAGTGACTATCAGCAGCTTAAGCTAGATC
TGGCCGCTCAGCGCGAGCGCCAGCAGCAGACGGAGGTCTACGTCCAGGAA
CTGCGCGAGGAGATGCTCCAGCAGGAGCAGGACTTCCAGCATGCCCTCGT
CAAGCTGCAGCAGAGGACTCGCAAGGACGGCTCATCCGCCAGTGTGAGGA
GAGAGCGGTAGCCAGGAGCCAACCAGGAGCAAACCGGACTTGAAACCACT
GCTGATCACAAGCGACGCCATTGCCGTTTTCAGAGCGAACAGATCCACCA
GCTGCACTGGCCCAGAGGAACCTGCGCCGACGGTGAACGAATGCGCTTCC
ACACATCGACGAGCGGGTTCGCAAGCATCGAGTTGACCGCCAAGATGCAA
TGCCACTTATTGAAACAGCGAATGCTCCTGGACACTGCATACCTGAGTCT
GAACTGCCTGAA
UFO07282.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sca-RB | 3796 | CG17579-RB | 323..1402 | 9..1082 | 5190 | 99.2 | Plus |
| sca-RA | 2876 | CG17579-RA | 323..1402 | 9..1082 | 5190 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12780863..12781393 | 9..539 | 2655 | 100 | Plus |
| 2R | 25286936 | 2R | 12784345..12784742 | 535..929 | 1840 | 99.2 | Plus |
| 2R | 25286936 | 2R | 12799258..12799407 | 928..1073 | 535 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:46:37 has no hits.
UFO07282.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:12 Download gff for
UFO07282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sca-RB | 312..1402 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:11 Download gff for
UFO07282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sca-RA | 315..1405 | 1..1085 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:27 Download gff for
UFO07282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sca-RA | 315..1405 | 1..1085 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:27 Download gff for
UFO07282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12780855..12781392 | 1..538 | 99 | -> | Plus |
| 2R | 12784349..12784742 | 539..929 | 99 | -> | Plus |
| 2R | 12799260..12799418 | 930..1085 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:11 Download gff for
UFO07282.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8668360..8668897 | 1..538 | 99 | -> | Plus |
| arm_2R | 8671854..8672247 | 539..929 | 99 | -> | Plus |
| arm_2R | 8686765..8686923 | 930..1085 | 95 | | Plus |
