UFO07288.5prime Sequence
1126 bp (1034 high quality bases) assembled on 2011-06-24
> UFO07288.5prime
CAGTCGACATGAGTTCCGCGGTCAGCGAGTCCAAGCTCAAGGAGTACTAC
GATGTGGCCCTGAAACTGGTCCTCAAGTGCGGGCCTCTGATGCAGGAGGG
CTATCAGAAGGCAAAGACGGAATACAAGGTCAAGGCGGACTTCTACGACC
TGGTGACCGTGTACGATAAGCAAATCGAGGATATTTTGACCGAGGGATTG
GTGGCCGCCTTTCCCGAATCCCTGATCATTGGCGAGGAGGAGTCGGCAGT
TTCACAGCGCCAGGCGGAGCTGACTGATGCACCCACGTGGATCATAGATC
CCATCGACGGCACCACAAACTTCATTCACCGCATCCCGCACTGCTGCATC
TCCGTGGGCCTGGCCATCAACAAGGAGCTGGTCGTGGGCATTATCTACAA
TCCACCGGCGAATGAACTATTCTCCGCCTACAAGGGACACGGAGCCTATC
TGAATGGCGAACCCATCCACACATCCAAAGTGACGACGATCAAGCAAGCA
GTGATTGCCTACGAGATCTCCCTGATCCACGCCGCCGGAGTGAGGGACAA
GAATGTGAAGCGACTGTACAAGATGGCCTCGAATGCCACGGGAACCAGGT
GTTTCGGAAGTGCCGCCCTGACCCTGTGCTACGTGGCCACGGGCCAGTGC
GATGCCTATCATGTGGAGGATCTGAAACCGTGGGACATTGCTGCCGGAGC
CATCATTCTGACCGAAGCTGGCGGCACTGTGTGCCATACCAGCGGATCCA
AATTCGATGTGATGAAACCGGATTGCGTGTGCGCCGCCACGCCGGAGTTG
GCCAAGAATGTGATTAGTCTTATCGAAGAGGCCGGTCAGATTACAGAGTA
CACATTTAAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGAGATCTGTCATGACTAGTGCTTGATTCTCACCATAAAAACGCCCGCGC
AACGACGTCTGAACAATCAGATGGAGTTCTGAGGTCATACTGAATCTATC
ACAGGAGTCAGCGAGCTCGAAATCAATACGCTCGGCTGCCATCATGCAGT
ACTGTTGTATTCATAAGCATTCGCCA
UFO07288.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17029-RB | 1167 | CG17029-RB | 207..1057 | 9..859 | 4255 | 100 | Plus |
| CG17029-RA | 1004 | CG17029-RA | 44..894 | 9..859 | 4255 | 100 | Plus |
| CG17028-RB | 893 | CG17028-RB | 69..793 | 58..782 | 490 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15977076..15977555 | 9..488 | 2400 | 100 | Plus |
| 3L | 28110227 | 3L | 15977954..15978325 | 488..859 | 1860 | 100 | Plus |
| 3L | 28110227 | 3L | 15978801..15978949 | 267..415 | 295 | 79.9 | Plus |
| 3L | 28110227 | 3L | 21267397..21267491 | 362..268 | 190 | 80 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:47:53 has no hits.
UFO07288.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:23 Download gff for
UFO07288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17029-RA | 48..909 | 1..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:49 Download gff for
UFO07288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17029-RA | 39..900 | 1..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:55 Download gff for
UFO07288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17029-RA | 39..900 | 1..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:55 Download gff for
UFO07288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15977955..15978331 | 489..866 | 99 | | Plus |
| 3L | 15977071..15977555 | 1..488 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:49 Download gff for
UFO07288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15970171..15970655 | 1..488 | 99 | -> | Plus |
| arm_3L | 15971055..15971431 | 489..866 | 99 | | Plus |
