UFO07293.5prime Sequence
1107 bp (1003 high quality bases) assembled on 2011-06-24
> UFO07293.5prime
CAGTCGACATGTTAGCTACTCTTTGGATCATATTACTGAGTAGCACCTTC
GGTAAATGCCTCGACAATGGGCTTGCCAAAACTCCTCCAATGGGTTGGCT
TTCCTGGGAGAGATTTCGTTGCAACACGGATTGCGTGAACGATCCAGATA
ATTGCATTAGTGAACAACTATTTCAAACCATGACTGATATTGTTGTGGCG
GATGGATATGCATCTGTGGGCTATGAATACATAAATATCGACGATTGCTG
GTTGGAAAAACATCGCAGTCACGATGGAAAATTGGTAGCTGATCGCAAAC
GTTTTCCGAACGGCATTAAAGCTTTGTCTGATTATATTCACTCGAGAGGC
CTCAAGTTTGGAATTTACGAGGACTACGGCAACTACACCTGCGCCGGATA
TCCGGGCATTATTGGTTATGAGGAGAAGGATGCCCTTCAATTCGCGGACT
GGAATGTGGACTACGTGAAGCTAGATGGTTGCTATGCTCTGCCCTACGAT
ATGGATCATGGCTACTCCACTTTCGGTCGACTTCTGAACAGCACGGGCAA
ATCGATGGTGTATTCCTGCAGCTGGCCAGTTTATCAGATTTATGCGGGAA
TACAGCCAAACTACTCGGCCATCCAAACGCACTGCAACCTGTGGAGGAAC
TATGACGACATCCAGGACTCGTGGGCATCCGTGGAGAATATAATCGATTA
TTATGGCAACAACCAGGACGTAATAGCGCCCAACGCACGTCCTGCTCATT
GGAACGATCCAGATATGTTGATTATCGGAAATTTCGGACTGAGTTACGAG
CAAGCTAAAACCCAATTCGCAATTTGGTCAATTTTGGCCGCTCCACTTTT
GATGTCGGTTGATTTGAGACGATTCGTCCGCAGTTTAAACACATTCTACA
GAATCGAAGATAATCGCCGTGATCAGATCCGCTTGGATACAGGAGGTGAT
TTATAAACACAGGCATGAGATCTGGTCAGACGATGACCGCCTCTATCAAA
CTTTACTCCTACGCCATGCTGGTGAATAGAGGACTGATGACCCCCATCGG
AATTTCGTTACTGAAGAATGGCTTGAATACTTTCTGCTACGGAGTGGAGG
ACTTACG
UFO07293.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5731-RA | 1761 | CG5731-RA | 294..1418 | 9..1102 | 4700 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10207920..10208351 | 767..336 | 2130 | 99.5 | Minus |
| 2L | 23513712 | 2L | 10208408..10208584 | 335..159 | 885 | 100 | Minus |
| 2L | 23513712 | 2L | 10208645..10208796 | 160..9 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 10207701..10207857 | 921..767 | 685 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:48:07 has no hits.
UFO07293.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:25 Download gff for
UFO07293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5731-RA | 287..1327 | 9..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:57 Download gff for
UFO07293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5731-RA | 294..1334 | 9..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:52:00 Download gff for
UFO07293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5731-RA | 294..1334 | 9..1030 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:52:00 Download gff for
UFO07293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10207575..10207856 | 768..1030 | 91 | <- | Minus |
| 2L | 10207920..10208351 | 336..767 | 99 | <- | Minus |
| 2L | 10208408..10208582 | 161..335 | 100 | <- | Minus |
| 2L | 10208645..10208804 | 2..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:57 Download gff for
UFO07293.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10208645..10208804 | 2..160 | 97 | | Minus |
| arm_2L | 10207575..10207856 | 768..1030 | 91 | <- | Minus |
| arm_2L | 10207920..10208351 | 336..767 | 99 | <- | Minus |
| arm_2L | 10208408..10208582 | 161..335 | 100 | <- | Minus |
