UFO07296.5prime Sequence
886 bp (495 high quality bases) assembled on 2011-06-24
> UFO07296.5prime
CAGTCGACATGTCACAGGATACGAAGACCGTGGCGACAGCCAAAGACCAG
AACCAACGAGACCATATCGACGAGGAAAAAGTCATCGAACTCCACGAGTC
ACGCAGCTTTTACGATCGGGTTCGCGAACAGGCGGAGCGATTTGCTAGCA
CACGAGTTGGCCAATTCGTGATCGAACGGGCTGATAAAGCGCTGGCCATG
ATCGAGGATACTGCCAAGTGGAGTCTTCCGCAAGACAAGTCTTCTGCTCC
CTTGGAACGCCCCCTGCCTTGGGCTCCATTCCTGATGCTCATCGTCCTGC
TGCGGCTCACACGCATTTGGTTATCGGTTGGCGCCCTGATGATCGGCAAT
GGTCCAATATCTCCTACGGATATGGTATACTTTATACAGACTAGACGCCG
CAAGCTGCGGGCCATTCGGGTTCATGGCCTAAAGGTGATGAGACGGCGCC
AGCAGGAGGTGTCCTATGGCAGTGGCAAGGGTATGACCCAGAAGCTCAAT
CAGTGGTTTTCCCGAGCCATGTGCCGTCCAGGAGTTCAGTAAGATAGCAA
ATCTCGCCGGGTGTTTTGTCCCCATTCGGAGCAAGGTTTAAGCAATTTCT
AATTAACGCCCTCGAGAGGAGGACTGCAATGTCAATGCCGACCTGACCTC
GACAAATGCTGGCCAGTTGCCAACGTAAATTCCGAAAAATGACTCCGACT
TTTGTGCCCCATGAGGAGGAGGAGGAAGGAGGAAGCAGCACTTCTCCTGG
GAAAGTAATCCTAAATCCGGCTCAGCGAATGAATATCATCGCGAGGTGAT
TGAGTTGTCACCAACCCAACAAAATCTCTGGAACGTGGTGGAAAAAGGAA
TGTACAGGCTGAGGAAAGGAATAGATAAGGGAAAAA
UFO07296.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:47:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jabba-RG | 1663 | CG42351-RG | 229..1122 | 9..885 | 3250 | 92.8 | Plus |
| Jabba-RH | 1667 | CG42351-RH | 229..1122 | 9..885 | 3250 | 92.8 | Plus |
| Jabba-RE | 1628 | CG42351-RE | 194..1087 | 9..885 | 3250 | 92.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18758945..18759295 | 583..233 | 1605 | 97.2 | Minus |
| 2R | 25286936 | 2R | 18759387..18759612 | 234..9 | 1085 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:47:35 has no hits.
UFO07296.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:43:20 Download gff for
UFO07296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42351-RD | 212..954 | 1..740 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:02:41 Download gff for
UFO07296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jabba-RE | 187..929 | 1..740 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:47 Download gff for
UFO07296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jabba-RE | 187..929 | 1..740 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:47 Download gff for
UFO07296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18758944..18759293 | 235..584 | 97 | <- | Minus |
| 2R | 18759387..18759619 | 1..234 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:02:41 Download gff for
UFO07296.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14646449..14646798 | 235..584 | 97 | <- | Minus |
| arm_2R | 14646892..14647124 | 1..234 | 97 | | Minus |
