UFO07304.5prime Sequence
1127 bp (920 high quality bases) assembled on 2011-06-23
> UFO07304.5prime
CAGTCGACATGACTTCTCGCGATAATATTTTCGAGGAAAAAATATGCAAT
AGATTAGATCATTGCGTTTCTGATGTATTAATTAAAGGATGTGGAGGCGT
AATTATTGGATCTGCTGTATCTTTCTTAATTTTAAAGAGACGAGCATGGC
CTGTATGGCTCGGCGCTGGATTTGGAATGGGCATCGCTTATAGGACGTGT
GAAAAGGATTTAAATTCTTTAAAAGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATC
AAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCT
CAATAAACCCTTAAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACA
TCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACT
CTGGAGCGAAGAAACGTTCAGTTGCTCATGGAAACGTGTACAAGGTGACA
CTATCCATATCACAGCTCACGTCTTCATGCATACGAATCCGATGACATCA
TCAGCGGCAAGATTGAAAAGCGAAAACTTGTGCTTTTTTCTTACGTCTTA
AAAGCGTATATCAGCTGACGTCTGTATAGTACATGACACTGACTGATGCT
AAATGTCTACATGCATGGATATCACGTGTATCATGATTTCCCATTACTCT
AGCCTGAGTGAATCTAGCACTTAGAGATCATGCTAGTCGATTGAACTCAC
TCATGACTCCGAAGTACTAGTGACATG
UFO07304.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG41128-RB | 364 | CG41128-RB | 96..311 | 9..224 | 1080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:12:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 3752167..3752300 | 91..224 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 3750458..3750542 | 9..93 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:12:10 has no hits.
UFO07304.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:54 Download gff for
UFO07304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG41128-RB | 45..280 | 1..236 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:17 Download gff for
UFO07304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG41128-RB | 45..280 | 1..236 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:48 Download gff for
UFO07304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG41128-RB | 88..323 | 1..236 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:48 Download gff for
UFO07304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 3750450..3750539 | 1..90 | 95 | -> | Plus |
| 3R | 3752167..3752300 | 91..224 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:17 Download gff for
UFO07304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3RHet | 1806581..1806714 | 91..224 | 100 | <- | Minus |
| 3RHet | 1808342..1808431 | 1..90 | 95 | | Minus |
