UFO07308.5prime Sequence
1137 bp (1010 high quality bases) assembled on 2011-06-23
> UFO07308.5prime
CAGTCGACATGAAACTCTACGCCGTATCCGATGGTCCGCCTTCCCTGGCC
GTTCGCATGACCCTGAAGGCCTTGGATATACAATATCAACTCATCAATGT
GGACTTTTGCGCCATGGAACATCGCTCTGAGGAGTACTCGAAGATGAATC
CGCAAAAGGAGATACCCGTGCTGGACGACGACGGTTTCTATCTATCGGAG
AGCATTGCCATTATGCAATACCTCTGCGACAAGTACGCGCCGGATTCAAC
GCTATATCCGCAGGACGTCAATGTGAGAGCAGTAATCAATCAGCGGCTAT
GCTTTAACATGGGATTCTACTATGCCCCCATATCCGCCCACAGCATGGCG
CCCATTTTCTTCGACTACAAACGTACGCCCATGTCGCTAAAGAAGGTGCA
GAACGCACTTGATGTGTTCGAAACCTATTTGCAGCGACTGGGCACTAAGT
ACGCGGCAGGCGAGAACATAACCATTGCAGACTTCGCTCTCATTTCGGCC
ACGATCTGCTTGGAGGCAATTAACTTTGACTTGCACCAGTTTACGTTGGT
GAACAAGTGGTACGAAACCTTCAAGGTGGAATACCCGCAGCTGTGGGAGA
TCGCCAACAGCGGCATGCAGGAGATAAGTGCGTTTGAGCAGAACCCACCG
GATATGTCACACATGGAACACCCATTCCATCCGACGCGCAAGTCTATGGG
CCTGAAGTTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCT
AGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGC
CCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCA
TTACTGGATCTATCAACAGAGTCCAAAGCGAGCTCGATATCAAATTACGC
CCCCGCCCTGCAGTCATCGCAGTACTGTTCGTAATTCATAGCAAGCTGCC
GACATGGAAGCATGAAAACGGCATGATGACCTGAATCGCAGCGGCATCAG
TCCTGTCGCTGCGTATAATATTTGCCCATGGGTGAAACGGGCAAAGTGTG
CCATTGGACCGGTATCCGAACTGGGTGAAACTTCACC
UFO07308.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gfzf-RE | 3608 | CG33546-RE | 2772..3473 | 9..710 | 3510 | 100 | Plus |
| gfzf-RD | 1200 | CG33546-RD | 62..763 | 9..710 | 3510 | 100 | Plus |
| gfzf-RB | 3910 | CG33546-RB | 2772..3473 | 9..710 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7146317..7146885 | 710..142 | 2845 | 100 | Minus |
| 3R | 32079331 | 3R | 7146945..7147079 | 143..9 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:12:19 has no hits.
UFO07308.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:55 Download gff for
UFO07308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RD | 55..766 | 1..718 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:22 Download gff for
UFO07308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 2768..3479 | 1..718 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:51 Download gff for
UFO07308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gfzf-RB | 2768..3479 | 1..718 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:51 Download gff for
UFO07308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7146311..7146883 | 144..718 | 99 | <- | Minus |
| 3R | 7146945..7147083 | 1..143 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:22 Download gff for
UFO07308.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2972033..2972605 | 144..718 | 99 | <- | Minus |
| arm_3R | 2972667..2972805 | 1..143 | 97 | | Minus |
