UFO07309.5prime Sequence
963 bp (558 high quality bases) assembled on 2011-06-23
> UFO07309.5prime
CAGTCGACATGAATAATATTGAAGAGGACACCGAAGCAGCCTTCAAACGG
CTCCAGGCTGTCATTCCACAGGTGAAGCAGGCCTACGAGGAAGCCATTGG
ACAGATCTTCTCGGATTTAAACTCCTCAGATCTTGAGTCGTGTGCCTCCA
TCCTCGAGGAGCACGAATCCACGAGCCTGGACACCGAGCAAATAATCCAC
AGCACCCGTCGGCTTATGACCAAGATCGTCCTGGATGTGAACCAGTGCTT
CTTCTCCGGCAACGACGTGGAGACCAAGCTGACCACGCTGGAAATGCTTA
AGGAGCAGTTTGCCGCCCACGAGGGCAAGAACTGGAACTTCAACTGTCTG
TCCCCTGAGGAACTTACTCGCCCTCTGCGCATGCACAACTTGAATCTAAG
CATCACATTTCATGGAGCAAACAGCTTAAGAAACCAGGAAAAGGAACTCC
AAGATTGGCTATGGCCCAAAGCATTAAAAAATCGACCAGCTTATACATGA
TGGTCCACGCTGAACGGGTGAAAGTGGGATTGTATGATGAAGCCACCGGT
TGGCCGAGTAACCAGCCCTTAAAGCCACAGTTTATGGAAAATGGAAACGC
CAATTAATGAATCCTATGGGCAAGAAGAAATGGCCAGGTTTTCAGAACAT
TCCTTTGGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTG
ATCTCACATAAACGCGCGACACTTACATCAAGATTAGCTATGTCTCACGT
CAGACCATCATACCCGCTGACTCATCGTGATCTACTCCATGACTCACGTG
ACACCCGCGCTGCTGTAATGCTGGACGCAATGCTGCTACAGGACCCGTGA
CAATCAACTAGACGTCGACCATGAATGACGACGTCAGATTCGAGAGACTA
CCTCACATCGATA
UFO07309.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:12:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nnf1b-RA | 783 | CG31658-RA | 70..681 | 9..632 | 2580 | 95.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 810809..811022 | 122..335 | 1070 | 100 | Plus |
| 2L | 23513712 | 2L | 810646..810758 | 9..121 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 811088..811200 | 334..449 | 430 | 97.4 | Plus |
| 2L | 23513712 | 2L | 811262..811429 | 458..632 | 300 | 87.4 | Plus |
Blast to na_te.dros performed 2014-11-27 00:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 3235..3311 | 16..95 | 113 | 65.4 | Plus |
UFO07309.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:56 Download gff for
UFO07309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnf1b-RA | 58..644 | 2..604 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:24 Download gff for
UFO07309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnf1b-RA | 67..653 | 2..604 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:53 Download gff for
UFO07309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nnf1b-RA | 67..653 | 2..604 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:53 Download gff for
UFO07309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 810643..810758 | 2..121 | 96 | -> | Plus |
| 2L | 810809..811021 | 122..334 | 100 | -> | Plus |
| 2L | 811089..811203 | 335..453 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:24 Download gff for
UFO07309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 810643..810758 | 2..121 | 96 | -> | Plus |
| arm_2L | 810809..811021 | 122..334 | 100 | -> | Plus |
| arm_2L | 811089..811203 | 335..453 | 95 | -> | Plus |
