UFO07316.5prime Sequence
933 bp (918 high quality bases) assembled on 2011-06-23
> UFO07316.5prime
CAGTCGACATGAGAATAGTTGGATCCAGTATGCTGGCAGCCCTCAAGCGG
CTATCAACGAACCAACCCCCCACCTTGGTCAGTAACATCCGGTACCTGAG
CTCGTTTGGAACCATGAGCCTGCCGGAGCGCCAGCCCTTTTCTCCAGACT
TCTTCTTCCGTCAACTTTTTGATGGAGAAAGCAGCACCTATAGCTACCTT
CTGGCCGATCTAAAGAATGGTCAGGCCGTAATCATTGATCCTGTTTTGGA
GCAGGCGAAACGAGATGCCCAGCTGGTCAAGGATCTGGGCTTCGAGTTGA
AGTATGCCATCAACACACACATGCATGCGGATCACATAACGGGCAGTGGC
TGGTTGAGGAAGTTAACTGGGTGTCAATCTGTGATTGCTGCCGCCAGTGG
AGCCAAGGCGGATCGTCACCTGAATGAAGGGGATCGCATAGATTTCGGCA
CCCATGTGATTGATGCTCTGGCCACTCCGGGACACACAAATGGCTGCATG
ACCTATGTGATCAAGGATCAGGGTTGTGTCTTTACCGGAGATACTCTCCT
GATACGAGGCTGTGGACGCACCGATTTCCAGGAAGGCTGCCCACGTAATC
TCTACGAGAATGTGCACAGTAAGATCTTCACACTCCCCGGAAAACTTTCG
CATATATCCGGCGCACGACTATAAAGGTCAAATGGAAAAGCAGTGTGTGG
GAGGAGAAGCGTTATAACCCCCAGACTGACTAAGGATATTTGAAGAAGTT
TGTCAAAAATCATGGAAAACCTAAATTTACCATATCCCAAGAAAATATGA
TGCCTGCGCTGCCCGCCAATCGAGAGTGCCGGGGTGTACGATATACCCAA
GGAAGCAAGGCTTTTCTACACCATTCATTTGGCGCGCGGGGCCCAGTGTA
AGTGGGTCATATCAAATCCATAATCGTAATCAT
UFO07316.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:12:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30022-RB | 1356 | CG30022-RB | 417..1253 | 9..854 | 3990 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11387545..11387908 | 674..310 | 1775 | 99.7 | Minus |
| 2R | 25286936 | 2R | 11388208..11388363 | 164..9 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 11388000..11388148 | 309..161 | 730 | 99.3 | Minus |
| 2R | 25286936 | 2R | 2374640..2374775 | 161..296 | 455 | 89 | Plus |
| 2R | 25286936 | 2R | 2801249..2801359 | 161..271 | 420 | 91.9 | Plus |
| 2R | 25286936 | 2R | 2374785..2374882 | 576..674 | 400 | 96 | Plus |
| 2R | 25286936 | 2R | 2801354..2801439 | 588..674 | 355 | 96.6 | Plus |
| 2R | 25286936 | 2R | 11387373..11387490 | 797..675 | 350 | 95.1 | Minus |
| 2R | 25286936 | 2R | 2374937..2375054 | 675..797 | 320 | 93.5 | Plus |
| 2R | 25286936 | 2R | 2801494..2801611 | 675..797 | 320 | 93.5 | Plus |
| 2R | 25286936 | 2R | 11387263..11387309 | 854..807 | 190 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:12:37 has no hits.
UFO07316.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:58 Download gff for
UFO07316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30022-RB | 405..1254 | 1..858 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:30 Download gff for
UFO07316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30022-RB | 407..1256 | 1..858 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:59 Download gff for
UFO07316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30022-RB | 407..1256 | 1..858 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:59 Download gff for
UFO07316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11388208..11388371 | 1..164 | 97 | | Minus |
| 2R | 11387260..11387315 | 800..858 | 93 | <- | Minus |
| 2R | 11387372..11387490 | 675..799 | 94 | <- | Minus |
| 2R | 11387545..11387908 | 310..674 | 99 | <- | Minus |
| 2R | 11388000..11388144 | 165..309 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:30 Download gff for
UFO07316.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7275713..7275876 | 1..164 | 97 | | Minus |
| arm_2R | 7274765..7274820 | 800..858 | 93 | <- | Minus |
| arm_2R | 7274877..7274995 | 675..799 | 94 | <- | Minus |
| arm_2R | 7275050..7275413 | 310..674 | 99 | <- | Minus |
| arm_2R | 7275505..7275649 | 165..309 | 100 | <- | Minus |
