UFO07319.5prime Sequence
1023 bp (860 high quality bases) assembled on 2011-06-23
> UFO07319.5prime
CAGTCGACATGTCGCAACGCTTTGCACCTGGCCAAGCGCCGGTGCAGTCG
CGTTATCAGCCACCACCACCGGCGCCCGGCATGCGTCCCTATCCGCCGCC
AGGCGCCTCTTTTCCACCGCGCGGGTTTCCCCTGCATCCGAACACTACTC
AACCTGTTCCCGGCACGGCGAACGTGGCCGGGGTACCGGGAGTTCCTGGA
GTACCCGGCGTACCGGGACCATCGCTACTGCAGCGCGCCGCCCAACAGCC
GGGCTTTCAGAGCAGCCTTCGCGGTACTGGAGCCGGAGGTGGCGGTGTTG
GATCCGGCGGAGGCAGCAAGAGGTCAAATGAATCCCGCAGTTTGGGTGGC
GGTGGTAGCAAAAGTGATTTTGCGACGGCCAAAAAGAAAAAGAAGCTGGC
CGAAAAGATACTGCCGCAGAAGGTGCGGGATCTGGTGCCCGAATCGCAAG
CGTACATGGATCTGCTGACGTTTGAGCGAAAACTGGATGCCACCATAATG
CGCAAACGTCTGGACATCCAGGAGGCCCTCAAGCGCCCCATGAAGCAGAA
GCGCAAGCTGCGCATCTTCATCTCGAACACATTCTATCCCAGCAAGGAGC
CCACAAATGATGGCGAGGAGGGCGCCGTTGCCTCTTGGGAATTGCGGGTG
GAGGGTCGCCTGTTAGAGGATGGCAAGGGCGATCCCAATACAAAGATCAA
ACGCAAGTTTTCGTCGTTTTTCAAGTCGCTGGTTATCGAGCTGGATAAGG
AACTGTACGGTCCGGACACCATCTGGTCGAGTGGCATCGCACTCACACAC
CAGAGACGGCGGGTCCTGTGAACGGCGGCGTCGATGCTGCCCGTGAACTG
TACGCCACCATGGAACAACGCACCTGAACACATAGCACGACTGATTGACT
CGATCACACACGTCTCTGATTAGAAACGATGGACACATGCGAACGACAGC
AAGCCATCGAGATGAGGCGTCAAGCTGGAATCCCCGCCTCGATTCATCTC
ATCTATCAATTCTATCACAAGTC
UFO07319.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap60-RA | 1936 | CG4303-RA | 136..926 | 9..798 | 3930 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13158515..13159197 | 798..117 | 3365 | 99.9 | Minus |
| X | 23542271 | X | 13159266..13159373 | 116..9 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:12:47 has no hits.
UFO07319.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:59 Download gff for
UFO07319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap60-RA | 199..1016 | 2..814 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:35 Download gff for
UFO07319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap60-RA | 129..946 | 2..814 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:02 Download gff for
UFO07319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap60-RA | 129..946 | 2..814 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:02 Download gff for
UFO07319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13158495..13159197 | 117..814 | 99 | <- | Minus |
| X | 13159266..13159380 | 2..116 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:35 Download gff for
UFO07319.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13052528..13053230 | 117..814 | 99 | <- | Minus |
| arm_X | 13053299..13053413 | 2..116 | 96 | | Minus |
