UFO07322.5prime Sequence
1137 bp (961 high quality bases) assembled on 2011-06-23
> UFO07322.5prime
CAGTCGACATGGGCAACAAATGCTGCAGCAAGCGACAGGATCAGGAACTG
GCACTGGCCTATCCCACTGGGGGCTACAAGAAATCCGACTACACCTTTGG
CCAGACGCACATCAACAGCAGCGGCGGCGGCAACATGGGCGGCGTTCTTG
GCCAGAAGCATAACAACGGTGGCTCGCTGGACTCGCGCTACACGCCCGAT
CCCAATCATCGGGGTCCGTTGAAAATCGGCGGAAAGGGCGGCGTTGACAT
CATCAGACCACGCACCACACCAACCGGTGTTCCTGGTGTCGTGCTCAAGC
GCGTTGTCGTGGCCCTGTACGACTATAAATCCCGCGATGAATCCGATCTG
AGCTTCATGAAGGGTGACCGCATGGAGGTCATCGACGACACCGAGTCCGA
TTGGTGGCGCGTCGTGAACCTAACCACCCGGCAGGAGGGCCTCATCCCGC
TCAATTTCGTGGCGGAGGAGCGCAGCGTGAACAGCGAAGACTGGTTCTTT
GAGAATGTGCTACGAAAGGAGGCGGACAAGTTGCTGCTGGCCGAGGAGAA
TCCGCGTGGCACTTTCCTCGTGCGACCTTCAGAGCACAATCCCAATGGCT
ACTCGCTGTCGGTGAAGGATTGGGAGGATGGACGTGGATACCATGTGAAG
CACTACCGTATCAAGCCACTGGATAATGGCGGCTACTACATAGCCACCAA
TCAGACTTTCCCCTCGCTTCAGGCCTTGGTCATGGCATACAGCAAAAACG
CTCTTGGCCTGTGTCACATATTGTCGCGTCCCTGCCCCAAACCGCAGCCC
CAGATGTGGGACTTGGGTCCGGAGCTGCGCGATAAGTACGAGATTCCGCG
CTCGGAGATTCAGCTGCTGCGCAAACTGGGACGCGGCAACTTTGGCGAGG
TCTTCTACGGCAAATGGCGCAACAGCATGCGTATGTCGGCGGTCAAAAAC
GCCGCGCGAAGGCACCTGTGTCCACGGCTGCTTTCTTCAAGGAGGCCGCG
AGTGTGAAGAAGTCCCGAACCAGTGCCTGGTGGCCCTCTATGCCAGTTTG
GCCCCCAGGAAGAACCCTATTTACATCTGTGCAAGGATTACAATGTTCCA
AAGGCAATGTTCTGGTGTGAACTTCTTGGCCGGAGAG
UFO07322.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:12:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Src64B-RD | 2815 | CG7524-RD | 1031..2118 | 8..1106 | 4920 | 97.4 | Plus |
| Src64B-RC | 2567 | CG7524-RC | 783..1870 | 8..1106 | 4920 | 97.4 | Plus |
| Src64B-RI | 4338 | CG7524-RI | 933..2020 | 8..1106 | 4920 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:12:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4598154..4598419 | 273..8 | 1330 | 100 | Minus |
| 3L | 28110227 | 3L | 4595692..4595945 | 744..491 | 1270 | 100 | Minus |
| 3L | 28110227 | 3L | 4596064..4596284 | 490..270 | 1090 | 99.5 | Minus |
| 3L | 28110227 | 3L | 4595329..4595624 | 1044..745 | 1050 | 93 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:12:52 has no hits.
UFO07322.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:00 Download gff for
UFO07322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src64B-RC | 843..1896 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:38 Download gff for
UFO07322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src64B-RI | 929..1982 | 1..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:05 Download gff for
UFO07322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Src64B-RI | 929..1982 | 1..1063 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:05 Download gff for
UFO07322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4595312..4595624 | 745..1062 | 93 | <- | Minus |
| 3L | 4595692..4595945 | 491..744 | 100 | <- | Minus |
| 3L | 4596064..4596280 | 274..490 | 100 | <- | Minus |
| 3L | 4598154..4598422 | 1..273 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:38 Download gff for
UFO07322.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4595312..4595624 | 745..1062 | 93 | <- | Minus |
| arm_3L | 4595692..4595945 | 491..744 | 100 | <- | Minus |
| arm_3L | 4596064..4596280 | 274..490 | 100 | <- | Minus |
| arm_3L | 4598154..4598422 | 1..273 | 98 | | Minus |
