Clone UFO07330 Report

Search the DGRC for UFO07330

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:73
Well:30
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG6639-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO07330.5prime Sequence

932 bp (670 high quality bases) assembled on 2011-06-23

> UFO07330.5prime
CAGTCGACATGAAGCATTGTTGGGCAATCGGAACTCTACTCTTAGCAAGT
GTCCTTATGGGCAATGCCTGTCGACATACTTGCGTTACCCGGAATTTTTG
TTTGTATGAGGAACCAACATTTGATTACCGCTCCAGTAATTGCGGCAATA
CCAAAATTTGCTGTGCAGTTCTACGAAAGCCTGGAGGTACGGTTTTAATT
GAACCAAATGGCCCCGAAGATGATAAGGTTGGAGTAAACGGAATAAATGC
ACAACTATCGCCTACACGCGAACTCACTAGAGATCGCCCAAATACCATTG
AGTCACAAGTAAAGGAAATCAACGACTTCAGTGGGCGTCCAACCAACAAC
GAAAGGAATCCAGCAACCGAACCGAACAACGGCGGGTATACAACACCCAA
CGGTGGGTATCCAGTAAACAACGGTGGGTATCCAGTAAACAACGGTGGGT
ATCCATCAAACAACGGTGGGTATCCATCAAACAACGGTGGGTATCCAGTA
AACAACGGTGGGTATCCAGTAAACAACGGTGGGTATCCAGCAAACAACGG
TGGGTATCCAGCAAACAACGGTGGGTATCCAACAACCAACGTTGGAAATC
CAACAAACAACGGAGGGAACCCGATCATTGAACAACCAGACAAAGGCAAT
GCTCTCCATAGAATGCATACGGCATGGTAGACGATGGGCTCAGTAGTCAT
ACCACATATAGTGGGCTGTAGGTAGACCACGCATTGTGCTGCAATTGGTA
GAAGGAAAAACATTGATCAAGACGACCAACTCAATATCCCTGGGGCTGTT
GCTATTTTTCACAGTGGACAGTAACTTGGCTGGCGGATCCTGATTCAACC
AAATGTCTTTCTAACATTAGCTCACCGGGTAATTACATCGAACGACTGTG
TCAGGCTGCATGGACTAATCGTCAGAATTTTG

UFO07330.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:18
Subject Length Description Subject Range Query Range Score Percent Strand
SPH93-RA 1587 CG6639-RA 26..643 7..624 3090 100 Plus
SPH93-RA 1587 CG6639-RA 394..594 417..617 660 88.6 Plus
SPH93-RA 1587 CG6639-RA 457..673 375..591 620 85.7 Plus
SPH93-RA 1587 CG6639-RA 394..573 438..617 615 89.4 Plus
SPH93-RA 1587 CG6639-RA 478..700 375..597 605 84.8 Plus
SPH93-RA 1587 CG6639-RA 394..552 459..617 555 89.9 Plus
SPH93-RA 1587 CG6639-RA 749..903 740..892 545 92.4 Plus
SPH93-RA 1587 CG6639-RA 394..531 480..617 450 88.4 Plus
SPH93-RA 1587 CG6639-RA 499..636 375..512 450 88.4 Plus
SPH93-RA 1587 CG6639-RA 394..510 501..617 360 87.2 Plus
SPH93-RA 1587 CG6639-RA 520..636 375..491 360 87.2 Plus
SPH93-RA 1587 CG6639-RA 394..489 522..617 270 85.4 Plus
SPH93-RA 1587 CG6639-RA 541..636 375..470 270 85.4 Plus
SPH93-RA 1587 CG6639-RA 562..678 375..491 180 76.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17455207..17455655 624..176 2245 100 Minus
2L 23513712 2L 17455726..17455898 179..7 865 100 Minus
2L 23513712 2L 17455165..17455414 624..375 815 88.4 Minus
2L 23513712 2L 17455256..17455456 617..417 660 88.6 Minus
2L 23513712 2L 17455177..17455393 591..375 620 85.7 Minus
2L 23513712 2L 17455277..17455456 617..438 615 89.4 Minus
2L 23513712 2L 17455150..17455372 597..375 605 84.8 Minus
2L 23513712 2L 17455298..17455456 617..459 555 89.9 Minus
2L 23513712 2L 17455214..17455351 512..375 450 88.4 Minus
2L 23513712 2L 17455319..17455456 617..480 450 88.4 Minus
2L 23513712 2L 17454953..17455101 887..740 415 92.7 Minus
2L 23513712 2L 17455214..17455330 491..375 360 87.2 Minus
2L 23513712 2L 17455340..17455456 617..501 360 87.2 Minus
2L 23513712 2L 17455214..17455309 470..375 270 85.4 Minus
2L 23513712 2L 17455361..17455456 617..522 270 85.4 Minus
Blast to na_te.dros performed on 2014-11-27 00:13:17 has no hits.

UFO07330.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:03 Download gff for UFO07330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6639-RA 14..637 1..624 99 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:49 Download gff for UFO07330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6639-RA 20..643 1..624 99 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:13 Download gff for UFO07330.5prime
Subject Subject Range Query Range Percent Splice Strand
SPH93-RA 20..643 1..624 99 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:13 Download gff for UFO07330.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17455207..17455651 180..624 100 <- Minus
2L 17455726..17455901 1..179 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:49 Download gff for UFO07330.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17455726..17455901 1..179 97   Minus
arm_2L 17455207..17455651 180..624 100 <- Minus