UFO07331.5prime Sequence
960 bp (777 high quality bases) assembled on 2011-06-23
> UFO07331.5prime
CAGTCGACATGAGATGGGAACTTCGTTATGGCTGGCAAATTGTCACGTTC
CGAACAAATTGCGCTACTGCTGCCGCCGTTGCATGCCACCAACTTTTGTG
TCCTGTGTCTTTGACAAGTGCAGTGGAGATAATGCCGAATTCCTTTCCGC
CAGAGGGTCGTCGGCGGGAGCGAAGGTCGGGAAACTTGGTCCTTCGAGCC
GGATGCTGCTGCATCGGCAAATACTTTCTCCACAACCGCTGCGCCTCGTC
GGTGAAGAAGGAGTGCACCTTGGGCGAATACTCCGAGCTAATTGTCCCGC
CCACGGCCATCTGCCCGGCGGTACTCGACCGCCAGCGATCCGTGAATCAG
GCTCACAAGGCCACGCACTTCCAAATCACGCCGCCGGACGAGCTGAGCTG
CCCGCTGCTGGTGTTCGTCAATCCGAAGAGCGGCGGTCGCCAGGGGGATC
GCATCCTGCGGAAGTTCCAGTACATGCTCAATCCGCGCCAGGTGTACGAC
CTGTCCAAGGGCGGGCCCAAGGAGGGACTCACACTCTTCAAGGACCTGCC
TCGCTTCAGGGTCATTTGCTGTGGCGGCGACGGCACCGTCGGCTGGGTTT
TGGAAGCCATGGACTCCATAGAGTTGGCCAGCCAGCCGGCCATCGGAGTG
ATTCCCCTGGGAACGGGCAACGACCTGGCTCGCTGTCTCCGCTGGGGCGG
TGGATACGAGGGCAACTCCAATGTGCATTCAAGTCACGCTGTGCGTGCTC
AGGCAATCGAACTATGACAGACGACATGAAGGTGTGCATGTGCAACTAGA
CTCAGACACGACACGGCTCTGCGGTACTCTAAGAAAGACGTGACAGCAGT
CGCCACCCAAACAAATCTCTCACTCGAACGACGACCCAACGCGGCAGAGA
CGCCTCACCAGGAAATAGGAAACCCGCTAGCCGCACATATGAAAGGATGC
CGCAAAATGT
UFO07331.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:13:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dgk-RG | 3152 | CG34361-RG | 442..1148 | 7..713 | 3535 | 100 | Plus |
| Dgk-RK | 4214 | CG34361-RK | 1725..2210 | 228..713 | 2430 | 100 | Plus |
| Dgk-RH | 6282 | CG34361-RH | 2115..2600 | 228..713 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7846756..7846976 | 227..7 | 1105 | 100 | Minus |
| 2R | 25286936 | 2R | 7845033..7845205 | 526..354 | 850 | 99.4 | Minus |
| 2R | 25286936 | 2R | 7845738..7845870 | 360..228 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 7844656..7844757 | 713..612 | 510 | 100 | Minus |
| 2R | 25286936 | 2R | 7844886..7844973 | 612..525 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:13:21 has no hits.
UFO07331.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:04 Download gff for
UFO07331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgk-RG | 439..1148 | 1..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:10:52 Download gff for
UFO07331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgk-RG | 439..1148 | 1..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:14 Download gff for
UFO07331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dgk-RG | 439..1148 | 1..713 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:14 Download gff for
UFO07331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7844656..7844756 | 613..713 | 100 | <- | Minus |
| 2R | 7844886..7844972 | 526..612 | 100 | <- | Minus |
| 2R | 7845034..7845199 | 360..525 | 100 | <- | Minus |
| 2R | 7845739..7845870 | 228..359 | 100 | <- | Minus |
| 2R | 7846756..7846979 | 1..227 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:10:52 Download gff for
UFO07331.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3732161..3732261 | 613..713 | 100 | <- | Minus |
| arm_2R | 3732391..3732477 | 526..612 | 100 | <- | Minus |
| arm_2R | 3732539..3732704 | 360..525 | 100 | <- | Minus |
| arm_2R | 3733244..3733375 | 228..359 | 100 | <- | Minus |
| arm_2R | 3734261..3734484 | 1..227 | 98 | | Minus |
