UFO07332.5prime Sequence
808 bp (663 high quality bases) assembled on 2011-06-23
> UFO07332.5prime
CAGTCGACATGAGCACCTTTCCCAGCTTCGCGGACATTTCGGCCAAATTC
TCGGAGGCGACGCTGGACGAGATCATCCGAAACGCGGGCGGCACCCGGCA
CACCTCGTACAAATTTGGCCCAAGTGGCAAGAAGGGCGACGCCTATCTGA
GCCGTGTCTTCCGCATCACCATCTACGGCGTCAAGGAGGCGGAAGAGGGC
CAGGATGAGAAGCAACTAGAGATCAGTGTGATCGTGAAGGCCATGCCCGA
CAATCTGCACCGTCGGCGACTCTTCCGTTCGGTGATATTCTTCCGCAACG
AGATCAACTTCTACACCAAGGTGTTGCCGGCCATCGAGGCATTCCAGAAG
TCCCGCCAGCCCGCGCCTAAGAAGCCCTTCGTGGAGTACCCCCGCTGCCT
GGCCAGCCTGTGCGATGGCGTCAACGATTTCATCGCCCTGGAGGATGTGG
GTCCCAGGGGCTACAGGGCACCTGTACGTCAAGACTACATTTCGCTGGAA
GATGCCCTGCTGACGATGCGGACCCTGGGTCGTTTCCATGGCGTGGCCCT
GGCCTTCAATGCCCTGGATAGCAAGAACTTCGAGAAGGCTGCTGGTTCGC
TGGAGAACTATTGCACCCCCATGACGTCCTCGGAGGCCGCCGCACACACA
ACAAACGGCCATCGACCCGCAACTACGCTTCATAGTCGAGTGGCATCAAA
AAGACAGTCTTCTGAGCTGTCGTCTCGCCGCAACCCGCTTACGATCGCAG
TGTGGACAAGAGGATCACCCTCGTTGTAACAGTAGAGAACTCCTGTTCGT
TTTACTGA
UFO07332.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2004-RG | 1920 | CG2004-RG | 517..1113 | 9..605 | 2985 | 100 | Plus |
| CG2004-RF | 1509 | CG2004-RF | 106..702 | 9..605 | 2985 | 100 | Plus |
| CG2004-RD | 1729 | CG2004-RD | 326..922 | 9..605 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8713599..8714068 | 478..9 | 2350 | 100 | Minus |
| X | 23542271 | X | 8713279..8713406 | 605..478 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:41:29 has no hits.
UFO07332.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:29 Download gff for
UFO07332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2004-RA | 218..821 | 1..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:55:21 Download gff for
UFO07332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2004-RC | 230..833 | 1..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:25 Download gff for
UFO07332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2004-RD | 319..922 | 1..605 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:25 Download gff for
UFO07332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8713279..8713405 | 479..605 | 100 | <- | Minus |
| X | 8713599..8714072 | 1..478 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:55:21 Download gff for
UFO07332.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8607312..8607438 | 479..605 | 100 | <- | Minus |
| arm_X | 8607632..8608105 | 1..478 | 99 | | Minus |
