UFO07341.5prime Sequence
1097 bp (1003 high quality bases) assembled on 2011-06-23
> UFO07341.5prime
CAGTCGACATGCAGAACAATCCCAGCCCACAGCTACCCTGCAAGGGTATA
CTAAAGACTTCGCGTAGCTTCGACAAGTCGGGAGCCAGTTTTCGCAAAAG
TGCCAAGTTCGATGAGCTGAACGTGATGCAGACCTTCCATCCGGCCGACA
AGGACTACGGACACATGAAAATCGATGAGCCCAAAACGCCGTACAACTAC
ACGGAGGGCTTCGACGAGAACAGGGACGAGCTGGACACGGAGTTGCTAGT
GGAGAAACTCCGCATAGCGGCTAACACACAGCCGTCGACAGAGAGCATCG
AGGACGATGGTTCCTCCGGTGATGACCAGCCCCTTAGCGAAGAGGAGCGA
CAACGGCGGCGCGAATTCGAGCGACGCCGTAAGGCCCACTATCGCGAGTT
TGAGGCCGTCAAACTGGCACGAAAACTGATCCAGGAGGAGGACGACGACG
ATGACGACGAGGACAAGGGTGCGGATAGCCGGCCCTCGGGCTCGTCACAG
GGCGCTTCCAGCTCCGGACGTTTCGCGAGCAGTTCGACCAAACGGTCGAG
CTCTCAGGCTGACTCCACCACATCCCCGTCTACCAGCGCCGGCCAGAACA
TGGACCTGGAGCCATCGAATAACGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGTCATTACTGGATCTATCAACATGAGTCCAAGCGAGCTCGAT
ATCAAATTACGCCCGCCCTGCCACTCATCGCAGTACTGTTTGTAATTCAT
TAAGCATTCTGCCGACATGGAAGCCATCACAACGGCATGATGAACCTGAT
CGCCAGCGCATCAGCCACTTGTCGCCTTGCGTATAATATTTGCCCATGTG
AAAACGGGGCGAAGAAGTTGTCCATATTGCCGTTTAATTCAACTGAGTAA
CTCACCAGAATGCTGTAACAAAACATTCTCAATAACCTTAGAAATAG
UFO07341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| I-2-RB | 1574 | CG10574-RB | 316..930 | 9..623 | 3075 | 100 | Plus |
| I-2-RA | 1561 | CG10574-RA | 303..917 | 9..623 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9835011..9835282 | 623..352 | 1360 | 100 | Minus |
| 3L | 28110227 | 3L | 9835813..9835982 | 256..87 | 850 | 100 | Minus |
| 3L | 28110227 | 3L | 9835339..9835433 | 351..257 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 9836049..9836128 | 88..9 | 400 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:41:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 565..601 | 430..465 | 119 | 83.8 | Plus |
UFO07341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:31 Download gff for
UFO07341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| I-2-RB | 312..937 | 1..629 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:57:24 Download gff for
UFO07341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| I-2-RA | 299..924 | 1..629 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:32 Download gff for
UFO07341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| I-2-RA | 299..924 | 1..629 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:32 Download gff for
UFO07341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9835004..9835282 | 352..629 | 98 | <- | Minus |
| 3L | 9835339..9835433 | 257..351 | 100 | <- | Minus |
| 3L | 9835813..9835980 | 89..256 | 100 | <- | Minus |
| 3L | 9836049..9836132 | 1..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:57:24 Download gff for
UFO07341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9828104..9828382 | 352..629 | 98 | <- | Minus |
| arm_3L | 9828439..9828533 | 257..351 | 100 | <- | Minus |
| arm_3L | 9828913..9829080 | 89..256 | 100 | <- | Minus |
| arm_3L | 9829149..9829232 | 1..88 | 95 | | Minus |
