UFO07342.5prime Sequence
1149 bp (1007 high quality bases) assembled on 2011-06-23
> UFO07342.5prime
CAGTCGACATGCTTCTCAAGGTATTTTTACTGGTCTTCATCGCCACCCAC
CACTTGGTAGACTCAGCGGGTCCCCTTTCCAATATAGCCAGCGAAAGTAA
ACCAAAATCGTTCGAGGAGATTTTGCCTTCGGCGGTTCCCTTTGAGACCT
CACACAAACATCCGGGTGCCGGGGAGTGGGTGGAGGGATTTCAAACCTCC
CATAAAATAAGCATAAGGGCCACCGATTCCGCTGACTATTCGATGAATCT
GCTGCCTACTAAAGAGCGACCCGAATTGAACCCCGTTTTGAGTGCACTTA
TCAACGAAGATGTTATGAAGAGCATCGAGGCCAAAAGAGCCATAGAAGAA
GAGGAGCTGGCCGAGGTTAGGCGTGAAATTGAGCAGGCCGCCGTGTTAGA
GTTGGCCCAGAAGAGGGGCTTTACCACTACTGAGACACCTGCTCTTCTGT
TGACGACTTTGCCCACAGCTGGCAAGAAGCTCGATAACTTGGATGAGGAC
ATAGTCCTGGATCCTCACGAAGATTTTATCAACCAAAATTTTGCCCTGGA
GAGTGCGGGTAGTGAGAACAGCAAGAAATCCCGAATAGAGATTAAAAAGG
GACCCAATGGCCAGGACTACGAGTACGAGTATGTCTATTACTATGAAGAG
GACGATGACTCAAGCAAGGTGGATCCATCTGCAGAGCCCGACACGCGTGG
TAAGACTAGATATACCAATATCGAGAGGAGCACGACGGCCACTCCGAGTG
GAAATAGCCTACAGAGTGACAAGGCCAAAGGAAGATCATCTGATACCTCT
GAAGATATAGAGGCTGAACGGCTTCCGATGATCACTCGGTTTCCCAGTCG
TGGCAAGAACATTGAAGTGCCACCACAGCAGCTCTTGATTCTTTGGAATC
GCTGCCGAGCGCAGAAGATTAGTGTAAGCGCCCAGTTTGGAGTTGTGATA
GTGCTACTCACACGTGAAAAAGACAGACTCCCAGGTGAATGATTAACATA
TGTTCGAACGAGCGCACGAAGATGCACGTAGAGACAGCAGAAGAAGAACG
ATGCCTCGCGAGATTGCCACCCCGTCTGCGGCCCTATCTTGCTTTGCTAG
TCTACAAACTTGTTCGACAGTCAGTCCGTGATGAATGAGAGGTACTATA
UFO07342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3777-RE | 3428 | CG3777-RE | 260..1215 | 9..957 | 4605 | 99.3 | Plus |
| CG3777-RD | 4130 | CG3777-RD | 660..1615 | 9..957 | 4605 | 99.3 | Plus |
| CG3777-RC | 3402 | CG3777-RC | 234..1189 | 9..957 | 4605 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 346149..347076 | 23..945 | 4390 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:41:52 has no hits.
UFO07342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:32 Download gff for
UFO07342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3777-RC | 221..1204 | 1..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:57:54 Download gff for
UFO07342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3777-RA | 199..1182 | 1..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:35 Download gff for
UFO07342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3777-RC | 225..1208 | 1..971 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:35 Download gff for
UFO07342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 346149..347122 | 23..984 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:57:54 Download gff for
UFO07342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 240182..241155 | 23..984 | 97 | <- | Plus |
