UFO07346.5prime Sequence
1184 bp (1009 high quality bases) assembled on 2011-06-23
> UFO07346.5prime
CAGTCGACATGGCCGATGGAAATGGGCTGCCAGCGGGTGCAGCTTCCGGC
GGCATGGAAGCCGGGCAGACAGTGAATGGAGCGGGATCCGCCAGCCCCAC
GCCCACCTCCAGCTCGGGGGCGGGGGCCAGTGGGAGTGCCAATCAAGGAT
ATCATCAATTAAGCGTGACAATCGAGGAGGCTTCGCTGCGCAACAATGGC
TTCCTCAAGCCAAATCCCTACGTGGAGCTCTTGATTGACAGCAAAAGCAA
GCGGAAAACGGACCTGGTGAAGAACAGCTATTTGCCCAAGTGGAACGAGG
AGTTCACAGTGCTGATTACACCCAATTCAACGCTGCACTTCAAAGTGCTG
GATCACTCCAGTTTCCGTAAAGATGCCATGCTTGGAGAGCGGATCATCAA
CCTGGCGCACATTCTGCAGCACTACAATGGGCGGTGCGAGTTCCTTGAGC
TGACCATCGACCTGTTCGTCACCAGCAAGTCGGACAATCGCCAGACGAAG
AGCGGCGAACTAGTGGCCATCCTCAATGGCCTCAAACTCGATATGAGCAA
GCTGCAGATTCAGCCAGTGGCTGGCCAACAGAATGGCAATCCACCCGTCC
AGGCGGTCAATCCGTCGGTGGTCAGTGATGCGGCCGCCGGACGAAGTTGC
ATGATTTACGGTGGAGTACGGGCACGGATGCGACTACGCTCGAGCAGTGG
ACATAGCAACGGCGGAGAGACCCGCTCTCCTCTGCCGAATGGAGGTGGAG
ATCACAGGAGATCTACGCAGCGCCCCCGGTGTGGGAACGGCAACAGCAGC
AATCCCAGAATCAACAGCAGCCCCTGAGAATGGTCAATGGCAGTGGGGGC
GGCCGTGCCGCAGACAGCTCCGTATCCTCAGCAGCCACCAGCTCCCGCAC
TAGCTCGTCCTCTACCCAAGTGTACGGGAGCGCTGCCAGAAAATACACCA
CCAGCTGCTTGTTTATTTCGCCAGCTGGAGGAGGACCACCATTAGGACTG
TCTTGTAGTAGCAGGCCCCCAATTGAACACCAGTAGTTTGGACTTGTCTG
GTGATCCTGCATGATATTCGTCAATCTGCTATCACAAACCAAAGCGGAAT
GGTAGAAAGCCGCGGGCCCTGCAGGGGTGGGGAAATCGCGTCTGTGAACC
AATGACAGGGTCCGCCAAATCCCTAGCTGTAAAA
UFO07346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(dx)-RF | 3701 | CG4244-RF | 358..1391 | 9..1044 | 4770 | 97.9 | Plus |
| Su(dx)-RE | 3520 | CG4244-RE | 177..1210 | 9..1044 | 4770 | 97.9 | Plus |
| Su(dx)-RA | 4612 | CG4244-RA | 574..1607 | 9..1044 | 4770 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2040421..2041103 | 314..998 | 3030 | 98.1 | Plus |
| 2L | 23513712 | 2L | 2039992..2040154 | 9..171 | 815 | 100 | Plus |
| 2L | 23513712 | 2L | 2040217..2040359 | 172..314 | 715 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1111..1142 | 790..821 | 115 | 84.4 | Plus |
UFO07346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:30 Download gff for
UFO07346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(dx)-RA | 262..1301 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:55:54 Download gff for
UFO07346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(dx)-RA | 568..1607 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:27 Download gff for
UFO07346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(dx)-RA | 568..1607 | 1..1044 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:27 Download gff for
UFO07346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2040217..2040359 | 172..314 | 100 | -> | Plus |
| 2L | 2039986..2040154 | 1..171 | 97 | -> | Plus |
| 2L | 2040422..2041149 | 315..1044 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:55:54 Download gff for
UFO07346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2039986..2040154 | 1..171 | 97 | -> | Plus |
| arm_2L | 2040217..2040359 | 172..314 | 100 | -> | Plus |
| arm_2L | 2040422..2041149 | 315..1044 | 97 | | Plus |
