UFO07355.5prime Sequence
949 bp (678 high quality bases) assembled on 2011-06-23
> UFO07355.5prime
CAGTCGACATGAGCGAGACCATAAACACCGCGGCTCAGTTCCCGAGCTTC
GAGAAGCCGACCGTGCAGTTCAATGAAAAGGGCTGGGGTCCCTGCGAGCT
GCCCGATACGTTCAAGGATGTGCCGTACCAGCCGTTCAGCAAGAACGATC
GTCTGGGCAAGATCTGCGACTGGACGAATACGTCGAACAACGACAAGAAG
TACCAGAACAAGTATGCCTCCAGCTTTGGCACGGGCATTCAGTACTCGTA
CTACCATGAGGAGGACGAGACAACCTTCCACCTGGTGGACACGGCCCGCG
TCCAGAAGCCGCCGCACCAGCGCGGCCGGTTCCGCAACATGAGGAATTCG
CGTTCCGGTCGTGGCAGGAATGCCCGCGGTGGCCTTAATACTCACGGCAT
GACGACGCTCAGCGGCAAGAATGTAAAGGCCCGCGATCCGCGCCATGGTC
GCGGCATGGGCAAGAAGTTCGGTCATCGCGGACCACCACCAAAGATGCGC
GAATCTTCGGTGGCCGTCCGCGCCGATTGGGCATCCATCGAGGAGATGGA
CTTCCCGCGACTCATCAAGCTGTCGCTGCCCAACATCAAGGAGGGCGTCG
ATATTGTCACCTGCGGCACGTTGGAGTACTACGCAACTCACGACATGGAG
ACAGAGCGTGAAGTCACGACTGTCGGCACAAAGTCCGCTCGCTTGCAACG
CGAGCTCCCGCCTCTGCACACTGGTTCCACATATCTGGTTGCTCAAATGG
CAGGCTGCACTGCCCATCACGTGCTGACAACACTGACCACGCAACCTGAC
CTCACGCTCAGATCTACCATACAAGGTAATGACGACAAATCAGACACTCC
CAGAAACATGCCGGTCGAAATGATGACATGCGACTCACAGGTGACAGGCA
TATAGCATGCATGAGGAGATGCCGGTGCAGACAGAGGGTGGAAGTGTCA
UFO07355.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-3p66-RB | 2012 | CG10161-RB | 149..777 | 5..633 | 3130 | 99.8 | Plus |
| CG4810-RA | 2232 | CG4810-RA | 111..313 | 81..292 | 225 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23680512..23680937 | 208..633 | 2130 | 100 | Plus |
| 3R | 32079331 | 3R | 23680187..23680389 | 5..207 | 1000 | 99.5 | Plus |
| 3R | 32079331 | 3R | 12194813..12194872 | 175..116 | 210 | 90 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:42:05 has no hits.
UFO07355.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:34 Download gff for
UFO07355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p66-RB | 141..775 | 1..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:59:24 Download gff for
UFO07355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p66-RB | 147..781 | 1..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:41 Download gff for
UFO07355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-3p66-RB | 147..781 | 1..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:41 Download gff for
UFO07355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23680512..23680941 | 208..636 | 99 | == | Plus |
| 3R | 23680185..23680389 | 1..207 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:59:24 Download gff for
UFO07355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19505907..19506111 | 1..207 | 98 | -> | Plus |
| arm_3R | 19506234..19506663 | 208..636 | 99 | == | Plus |
