UFO07356.5prime Sequence
1074 bp (915 high quality bases) assembled on 2011-06-23
> UFO07356.5prime
CAGTCGACATGTTTCTGGCCAAGAGCATAGTGTGCCTCTCCCTCCTGGCG
GTGGCCAATGCCCAATTCGACACCAACTACGCATCCGGTCGTAGTGGAAT
GGTCCACCTCTTCGAGTGGAAGTGGGACGACATCGCTGCCGAGTGCGAGA
ACTTCCTGGGACCCAATGGCTACGCCGGTGTTCAGGTCTCCCCTGTGAAC
GAGAACGCCGTCAAGGACAGCCGCCCCTGGTGGGAACGTTACCAACCCAT
CTCCTACAAGCTGGAGACCCGCTCCGGAAACGAGGAGCAGTTCGCCAGCA
TGGTCAAGCGCTGCAACGCCGTCGGAGTGCGCACCTACGTGGACGTGGTC
TTCAACCACATGGCCGCCGACGGAGGCACCTACGGCACTGGCGGCAGCAC
CGCCAGCCCCAGCAGCAAGAGCTATCCCGGAGTGCCCTACTCCTCGCTGG
ACTTCAACCCGACCTGCGCCATCAGCAACTACAACGACGCCAACGAGGTG
CGCAACTGCGAGCTGGTCGGTCTGCGCGACCTTAACCAGGGCAACTCCTA
CGTGCAGGACAAGGTGGTCGAGTTCCTGGACCATCTGATTGATCTCGGCG
TGGCCGGATTCCGCGTGGACGCCGCCAAGCACATGTGGCCCGCCGACTTG
GCCGTCATCTATGGCCGCCTCAAGAACCTGAACACCGACCACGGCTTCGC
CTCGGGATCCAAGGCATACATCGTCAGGAGTCATCGACATGGGCGGCGAG
GCATCAGCAGTCCGAGTACACGGACTGGCGCATCACGAGTCCGCACTCCG
ACTCATCGCAGTCTCCGCGCAAGACAGCTGCAGTATCTGACAACTGGGCA
CGCTGGGCTCGCGCTCGACGCTCCTGTATCGTCGACACACGACACAGGCG
ACATGAGCAGAGCCGACTGTGACTACAGTGCAGATAAAAGCTCGCTCTGT
GCACATCGCTCCCGTGTTCTCTCCTCGACGTAGCCCCACAGCAAATCCTC
CATTCAACACTCTGAGGGTGGTGCAACCTGCCATCAATGGCTCGACCTGA
GGAATCATGGACGATGTCTCATCG
UFO07356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amy-d-RA | 1606 | CG17876-RA | 36..895 | 8..848 | 3805 | 97.6 | Plus |
| Amy-p-RB | 1668 | CG18730-RB | 33..892 | 8..848 | 3715 | 96.9 | Plus |
| Amy-p-RA | 1595 | CG18730-RA | 33..892 | 8..848 | 3715 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17124799..17125566 | 8..771 | 3610 | 99.2 | Plus |
| 2R | 25286936 | 2R | 17119504..17120271 | 771..8 | 3535 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:42:09 has no hits.
UFO07356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:35 Download gff for
UFO07356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-d-RA | 31..909 | 1..857 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:59:54 Download gff for
UFO07356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-d-RA | 31..909 | 1..857 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:43 Download gff for
UFO07356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amy-d-RA | 29..907 | 1..857 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:43 Download gff for
UFO07356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17124792..17125670 | 1..857 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:59:54 Download gff for
UFO07356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13012297..13013175 | 1..857 | 96 | | Plus |
