UFO07373.5prime Sequence
1111 bp (969 high quality bases) assembled on 2011-06-23
> UFO07373.5prime
CAGTCGACATGGACATCTCAAAGGCACCAAATCCGCGAAAACTGGAGCTG
TGTCGCAAATACTTCTTTGCTGGCTTTGCATTTCTGCCCTTTGTGTGGGC
CATTAACGTTTGCTGGTTTTTCACGGAGGCCTTCCATAAGCCACCATTTT
CGGAGCAGAGCCAAATAAAGAGATATGTTATATACTCTGCAGTGGGGACT
CTATTCTGGCTGATAGTACTAACTGCCTGGATAATAATATTCCAGACAAA
TCGCACAGCCTGGGGCGCCACAGCGGACTATATGAGCTTCATCATACCCC
TAGGCAGTGCAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGG
CATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGG
GGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAA
CTCACCCAGGGCTTGGCTGGAGACGAAAAACATATTCTCAATAACCCTTT
AGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATA
TGTGTAGAAACTGCCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGA
AAACGTTTCAGTTTGCCTCATGGAAAACGGTGTAACAAGGTGAACCACTA
TCCCATATCACCAGCTCACCCGTCTTTTCATTGCCTGACGAATTCCGGAT
GGAGCATGCATCAAGCCGGGCCAAGATGTGATTAAAGGCCGGGATAAAAC
TTTGTTGCTTATTTTTCTTTACGGTTCTTTAAAAGGGCGGTAAATATCCC
AGCTGAACCGT
UFO07373.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pen-2-RB | 1181 | CG33198-RB | 182..485 | 8..311 | 1520 | 100 | Plus |
| pen-2-RA | 543 | CG33198-RA | 182..485 | 8..311 | 1520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18277930..18278066 | 175..311 | 685 | 100 | Plus |
| 2R | 25286936 | 2R | 18277746..18277855 | 65..174 | 535 | 99.1 | Plus |
| 2R | 25286936 | 2R | 18277620..18277681 | 8..69 | 310 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 23:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..289 | 881..939 | 112 | 67.8 | Plus |
UFO07373.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:36 Download gff for
UFO07373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pen-2-RA | 95..398 | 8..311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:07 Download gff for
UFO07373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pen-2-RA | 182..485 | 8..311 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:46 Download gff for
UFO07373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pen-2-RA | 182..485 | 8..311 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:46 Download gff for
UFO07373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18277930..18278066 | 175..311 | 100 | == | Plus |
| 2R | 18277620..18277681 | 8..69 | 100 | -> | Plus |
| 2R | 18277751..18277855 | 70..174 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:07 Download gff for
UFO07373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14165125..14165186 | 8..69 | 100 | -> | Plus |
| arm_2R | 14165256..14165360 | 70..174 | 100 | -> | Plus |
| arm_2R | 14165435..14165571 | 175..311 | 100 | == | Plus |
